Os12g0638900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Smr protein/MutS2 C-terminal domain containing protein.
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Os12g0638900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Smr protein/MutS2 C-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.48 | 0.264 | 12 | 0.725 | 1.09 | 0.353 | -0.541 | 2.52 | -0.0759 | 11.8 | 10.79 | 9 | -- | -- |
| 33.47 | 0.269 | 12.1 | 0.362 | 1.04 | 0.439 | 0.00457 | -- | -0.195 | 11.7 | 24.05 | 10 | -- | -- |
| 32.41 | 0.267 | 12 | 0.62 | 1.09 | 0.348 | -- | 1.88 | -0.1 | 11.8 | 13.3 | 21 | -- | -- |
| 33.35 | 0.269 | 12.1 | 0.36 | 1.05 | 0.468 | -- | -- | -0.176 | 11.6 | 24.1 | 11 | -- | -- |
| 90.17 | 0.445 | 12.1 | 0.39 | -- | 1.45 | -- | 1.89 | -0.26 | -- | 11.67 | 8 | -- | -- |
| 36.75 | 0.284 | 12 | 0.434 | 1.18 | -- | 0.0555 | -- | -0.118 | 12.1 | -- | -- | -- | -- |
| 36.76 | 0.284 | 12 | 0.436 | 1.18 | -- | -- | -- | -0.118 | 12.1 | -- | -- | -- | -- |
| 88.83 | 0.439 | 12.1 | 0.168 | -- | 1.22 | -- | -- | -0.327 | -- | 21.31 | 2 | -- | -- |
| 36.51 | 0.281 | 12.1 | -- | 1.02 | 0.565 | -- | -- | -0.232 | 11.5 | 23.6 | 12 | -- | -- |
| 124.67 | 0.522 | 12.1 | 0.399 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 41.77 | 0.302 | 12.1 | -- | 1.18 | -- | -- | -- | -0.166 | 12.1 | -- | -- | -- | -- |
| 89.54 | 0.441 | 12.1 | -- | -- | 1.25 | -- | -- | -0.351 | -- | 21.28 | 2 | -- | -- |
| 128.85 | 0.53 | 12.1 | -- | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.16 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 10 | 28.55 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 31 | 28.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 36 | 29.06 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 1 |
| 40 | 29.08 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 12 |
| 43 | 29.09 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 52 | 29.16 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 59 | 29.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |
| 68 | 29.27 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 75 | 29.30 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 80 | 29.31 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 15 |
| 117 | 29.38 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 6 |
| 126 | 29.40 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 128 | 29.41 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 138 | 29.42 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 11 | NA |
| 145 | 29.42 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 12 |
| 146 | 29.42 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 17 |
| 177 | 29.47 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 197 | 29.50 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 272 | 29.59 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 10 | NA |
| 309 | 29.63 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 21 |
| 361 | 29.68 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 17 |
| 390 | 29.70 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 21 |
| 397 | 29.71 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 414 | 29.72 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 9 |
| 483 | 29.78 | wind | 9 | 43200 | > th | dose independent | sin | 12 | NA |
| 486 | 29.78 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 527 | 29.81 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 530 | 29.81 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 546 | 29.82 | wind | 9 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 568 | 29.83 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 587 | 29.84 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 21 |
| 615 | 29.86 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 623 | 29.87 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 635 | 29.87 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 638 | 29.88 | wind | 9 | 43200 | < th | dose independent | sin | 12 | NA |
| 656 | 29.89 | wind | 9 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 674 | 29.90 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 756 | 29.93 | wind | 7 | 43200 | > th | dose dependent | sin | 12 | NA |
| 765 | 29.94 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 2 | 10 |
| 936 | 30.04 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 5 |
| 980 | 30.06 | wind | 5 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 985 | 30.07 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 4 |