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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0638100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Receptor-like protein kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.92 (0.034) R2 : 0.796
β1 : -0.748 (0.125) R2dD : 0.0167 R2D : -0.00419
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.8 (0.0909) R2dE : 0.786 R2E : 0.762
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.459 (0.0727) R2dN8 : 0.024 R2N8 : 0.00216
σ : 0.637
deviance : 186.79
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -7.584
memory length : 120
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 8.94
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.71 0.607 5.01 -0.706 3.25 2.97 -1.62 1.22 -0.527 19 8.197 94 4.66 --
168 0.604 5 -0.706 2.61 3.28 -1.8 -- -0.528 18.3 4.622 120 5.82 --
170.29 0.608 5.05 -0.674 4.67 3.73 -- 2.1 -0.554 18.7 2.356 63 3.09 --
177.34 0.62 5.01 -0.757 3.08 2.97 -- -- -0.544 18.9 5.813 85 4.85 --
186.24 0.636 4.93 -0.736 -- 3.82 -- -0.307 -0.48 -- -7.422 114 8.9 --
206.83 0.674 4.98 -0.535 3.43 -- -0.0966 -- -0.306 21.6 -- -- -- --
206.86 0.674 4.98 -0.532 3.43 -- -- -- -0.306 21.7 -- -- -- --
186.79 0.637 4.92 -0.748 -- 3.8 -- -- -0.459 -- -7.584 120 8.94 --
192.1 0.646 5 -- 3.25 2.87 -- -- -0.426 19 4.615 99 4.71 --
902.98 1.4 4.89 -0.503 -- -- -- -- -0.312 -- -- -- -- --
214.32 0.685 4.97 -- 3.43 -- -- -- -0.247 21.6 -- -- -- --
200.65 0.66 4.9 -- -- 3.71 -- -- -0.352 -- -15.57 124 9.06 --
909.65 1.41 4.88 -- -- -- -- -- -0.256 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 167.30 temperature 10.0 90 > th dose dependent sin 11 NA
2 167.52 temperature 30.0 270 < th dose dependent rect. 18 11
4 168.26 temperature 30.0 90 < th dose dependent sin 10 NA
53 172.65 temperature 10.0 270 > th dose dependent rect. 16 10
82 174.19 temperature 10.0 270 > th dose dependent rect. 17 16
89 174.56 temperature 20.0 90 < th dose independent rect. 21 9
96 174.83 temperature 20.0 10 < th dose independent rect. 22 8
103 175.04 temperature 20.0 90 < th dose independent rect. 19 11
113 175.36 temperature 20.0 10 < th dose independent sin 9 NA
125 175.62 temperature 10.0 720 > th dose dependent rect. 6 12
129 175.67 temperature 20.0 10 < th dose independent rect. 20 10
147 176.02 temperature 30.0 720 < th dose independent rect. 3 11
157 176.15 temperature 30.0 270 < th dose independent rect. 10 8
160 176.15 temperature 10.0 720 > th dose dependent rect. 13 13
183 176.46 temperature 30.0 270 < th dose dependent rect. 11 18
204 176.64 temperature 10.0 270 > th dose dependent rect. 21 12
205 176.65 temperature 20.0 90 < th dose independent sin 10 NA
253 177.15 temperature 30.0 720 < th dose independent rect. 11 2
257 177.17 temperature 10.0 270 > th dose dependent sin 17 NA
258 177.18 temperature 30.0 720 < th dose independent rect. 10 4
336 178.03 temperature 10.0 720 > th dose dependent rect. 11 7
388 178.46 temperature 30.0 720 < th dose dependent rect. 18 3
450 178.93 temperature 30.0 10 < th dose dependent rect. 14 16
490 179.14 temperature 30.0 10 < th dose dependent rect. 12 18
496 179.18 temperature 10.0 10 > th dose dependent sin 15 NA
508 179.22 atmosphere 1015.0 720 < th dose independent rect. 21 6
519 179.30 temperature 30.0 270 < th dose independent rect. 2 16
558 179.56 temperature 20.0 90 > th dose independent rect. 16 11
561 179.59 radiation 20.0 270 < th dose dependent sin 12 NA
621 179.89 temperature 30.0 720 < th dose independent rect. 21 17
624 179.91 temperature 30.0 720 < th dose independent sin 5 NA
676 180.16 temperature 30.0 90 < th dose dependent rect. 19 21
685 180.21 temperature 10.0 720 > th dose dependent rect. 14 5
688 180.22 temperature 30.0 720 < th dose independent rect. 11 19
695 180.28 wind 1.0 270 > th dose independent rect. 19 10
710 180.36 temperature 20.0 90 < th dose independent rect. 15 15
776 180.64 temperature 10.0 270 > th dose dependent rect. 4 22
794 180.72 precipitation 0.1 720 < th dose independent rect. 21 6
797 180.72 precipitation 0.1 720 < th dose dependent rect. 21 6
814 180.77 temperature 20.0 90 < th dose independent rect. 12 18
834 180.85 temperature 20.0 10 > th dose independent rect. 16 12
866 180.97 temperature 10.0 720 > th dose dependent sin 23 NA
882 181.01 temperature 30.0 720 < th dose independent rect. 19 16
895 181.07 atmosphere 1015.0 720 < th dose independent rect. 15 10
896 181.07 temperature 10.0 720 > th dose dependent rect. 15 3
912 181.11 radiation 1.0 720 < th dose dependent rect. 17 12
917 181.13 temperature 20.0 10 < th dose independent rect. 14 17
919 181.13 temperature 15.0 10 > th dose dependent rect. 16 12
939 181.17 atmosphere 1015.0 720 < th dose independent rect. 13 14
959 181.21 atmosphere 1015.0 720 < th dose independent rect. 15 18