FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0637800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nodulin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.96 (0.0495) R2 : 0.721
β1 : 3.59 (0.184) R2dD : 0.255 R2D : 0.0994
β2 : 3.05 (0.121) R2dC : 0.422 R2C : 0.278
β3 : 2.25 (0.155) R2dE : 0.15 R2E : -0.0908
β4 : 5.64 (0.448) R2dD*C : 0.0963 R2D*C : 0.029
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.37 (0.108) R2dN8 : 0.14 R2N8 : 0.00398
σ : 0.921
deviance : 391.33
__
_____
C
peak time of C : 23.4
E
wheather : humidity
threshold : 71.47
memory length : 1257
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
381.75 0.918 4 3.29 3.07 2.17 5.89 2.19 1.28 23.4 71 1263 -- --
391.33 0.921 3.96 3.59 3.05 2.25 5.64 -- 1.37 23.4 71.47 1257 -- --
514.19 1.06 4.03 2.92 2.58 2.11 -- 2.36 1.14 23.2 72.05 1502 -- --
524.02 1.07 3.96 3.41 3.04 2.21 -- -- 1.37 23.6 71.06 1247 -- --
823.33 1.34 3.99 3.03 -- 1.56 -- 2.91 1.03 -- 73 1587 -- --
578.14 1.13 4.03 3.15 2.66 -- 5.26 -- 1.04 23.1 -- -- -- --
694.85 1.23 4.04 2.93 2.63 -- -- -- 1.02 23.3 -- -- -- --
872.64 1.38 3.97 3.12 -- 1.59 -- -- 1.06 -- 73.01 1587 -- --
799.44 1.32 3.96 -- 3.04 2.21 -- -- 1.37 23.6 71.06 9410 -- --
1127.59 1.57 3.97 2.99 -- -- -- -- 1.05 -- -- -- -- --
920.61 1.42 4.11 -- 2.66 -- -- -- 0.697 23.4 -- -- -- --
1114.12 1.55 4.05 -- -- 3.33 -- -- 0.783 -- 65 30433 -- --
1363.83 1.72 4.05 -- -- -- -- -- 0.716 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 384.26 humidity 70 14400 < th dose independent rect. 18 1
2 386.47 humidity 70 14400 < th dose independent rect. 17 3
3 386.67 humidity 70 14400 < th dose independent rect. 17 14
14 387.56 humidity 70 14400 < th dose dependent rect. 16 1
16 387.90 humidity 70 14400 > th dose independent rect. 17 7
17 387.91 humidity 70 14400 > th dose independent rect. 17 3
21 387.93 humidity 70 14400 > th dose independent rect. 17 14
33 390.76 humidity 70 14400 < th dose dependent rect. 16 15
34 390.80 humidity 70 14400 < th dose dependent rect. 16 6
50 392.08 humidity 60 1440 > th dose dependent rect. 6 15
62 392.34 humidity 70 1440 > th dose independent rect. 9 15
66 392.36 humidity 70 1440 > th dose independent rect. 9 21
67 392.37 humidity 70 1440 > th dose independent rect. 9 12
69 392.38 humidity 70 1440 > th dose independent rect. 9 19
91 392.92 humidity 70 1440 > th dose independent rect. 15 23
96 393.41 humidity 60 1440 > th dose dependent sin 1 NA
118 393.99 humidity 60 1440 > th dose dependent rect. 11 2
124 394.38 humidity 50 1440 > th dose dependent rect. 1 20
131 394.65 humidity 70 1440 > th dose independent rect. 13 23
150 394.87 humidity 70 1440 > th dose independent rect. 5 19
151 394.88 humidity 70 1440 > th dose independent rect. 3 21
157 394.90 humidity 70 1440 > th dose independent rect. 5 16
165 394.91 humidity 70 1440 > th dose independent rect. 3 18
171 394.91 humidity 70 1440 > th dose independent rect. 22 23
172 394.92 humidity 70 1440 > th dose independent no NA NA
214 395.18 humidity 70 1440 > th dose independent sin 20 NA
219 395.27 humidity 90 14400 < th dose dependent rect. 16 1
225 395.47 humidity 80 1440 < th dose independent rect. 7 14
241 395.62 humidity 60 1440 > th dose dependent rect. 6 9
248 395.77 humidity 90 14400 < th dose dependent rect. 15 3
252 395.80 humidity 70 1440 > th dose independent rect. 11 23
258 396.16 humidity 80 1440 < th dose independent rect. 7 8
261 396.26 humidity 50 14400 > th dose dependent rect. 15 3
269 396.40 humidity 50 14400 > th dose dependent rect. 16 1
327 396.99 humidity 70 14400 < th dose independent sin 12 NA
346 397.31 humidity 60 1440 > th dose dependent rect. 10 4
434 398.66 humidity 90 1440 < th dose dependent rect. 2 19
459 399.00 humidity 90 1440 < th dose dependent rect. 5 16
490 399.39 humidity 70 14400 < th dose dependent sin 13 NA
526 399.63 humidity 80 1440 < th dose independent sin 1 NA
533 399.65 humidity 50 1440 > th dose dependent rect. 17 23
558 399.85 humidity 50 1440 > th dose dependent rect. 15 23
562 399.88 humidity 50 1440 > th dose dependent no NA NA
572 399.98 humidity 70 1440 < th dose independent rect. 9 11
587 400.02 humidity 70 14400 > th dose independent sin 12 NA
598 400.05 humidity 90 1440 < th dose dependent rect. 15 23
629 400.28 humidity 80 1440 > th dose independent rect. 7 8
725 401.06 humidity 50 1440 > th dose dependent rect. 9 23
755 401.43 humidity 90 1440 < th dose dependent no NA NA
761 401.47 humidity 50 1440 > th dose dependent rect. 13 23
800 401.76 humidity 90 1440 < th dose dependent rect. 13 23
837 402.08 humidity 70 1440 < th dose independent rect. 15 23
880 402.38 humidity 90 1440 < th dose dependent rect. 9 23
893 402.53 humidity 90 1440 < th dose dependent sin 0 NA
907 402.64 humidity 70 1440 < th dose independent sin 20 NA