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Os12g0637700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nodulin-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.59 (0.039) R2 : 0.683
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.06 (0.155) R2dC : 1.26 R2C : 0.404
β3 : 2 (0.179) R2dE : 0.233 R2E : -0.588
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.441 (0.0823) R2dN8 : 0.0262 R2N8 : 0.0287
σ : 0.717
deviance : 236.7
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C
peak time of C : 20.8
E
wheather : temperature
threshold : 19.2
memory length : 712
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21.5
open length of G : 11.9

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
226.6 0.707 7.63 -0.718 4.09 2.1 -0.476 -1.47 0.317 20.7 19.15 721 21.2 11.8
229.61 0.706 7.62 -0.534 4.18 2.22 0.264 -- 0.35 20.7 19.2 718 21.3 11.8
227.02 0.702 7.63 -0.668 4.11 2.1 -- -1.1 0.32 20.7 19.2 728 21.3 11.6
229.66 0.706 7.6 -0.539 4.17 2.2 -- -- 0.367 20.8 19.1 716 21.3 12
340.8 0.86 7.48 0.0511 -- -2.25 -- -0.78 1.05 -- 10.78 4748 23 13
300.24 0.812 7.5 -0.0457 2.71 -- -0.283 -- 0.641 20.7 -- -- -- --
300.5 0.812 7.5 -0.0362 2.71 -- -- -- 0.641 20.7 -- -- -- --
305.66 0.814 7.33 0.0751 -- -2.49 -- -- 0.831 -- 10.77 4773 22.7 12.5
236.7 0.717 7.59 -- 4.06 2 -- -- 0.441 20.8 19.2 712 21.5 11.9
714.92 1.25 7.43 -0.0429 -- -- -- -- 0.618 -- -- -- -- --
300.54 0.811 7.5 -- 2.71 -- -- -- 0.645 20.7 -- -- -- --
305.43 0.814 7.33 -- -- -2.49 -- -- 0.795 -- 10.8 4772 22.7 12.5
714.97 1.25 7.43 -- -- -- -- -- 0.623 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 232.37 temperature 20 720 > th dose independent rect. 21 12
4 233.64 temperature 20 720 < th dose independent rect. 21 12
11 234.54 temperature 20 720 < th dose dependent rect. 23 6
19 235.05 temperature 20 720 < th dose independent sin 9 NA
39 235.99 temperature 20 720 > th dose independent sin 10 NA
55 236.63 temperature 20 720 > th dose independent rect. 22 6
141 239.87 temperature 20 720 < th dose dependent rect. 3 1
147 239.99 temperature 20 720 < th dose independent rect. 1 2
156 240.20 temperature 20 720 < th dose independent rect. 24 4
185 241.04 temperature 25 270 < th dose dependent rect. 7 2
228 242.25 temperature 20 720 > th dose independent rect. 21 21
238 242.38 temperature 20 720 < th dose dependent sin 10 NA
287 243.84 temperature 20 720 < th dose independent rect. 5 2
347 244.95 temperature 20 1440 > th dose independent rect. 20 4
361 245.28 temperature 20 1440 > th dose independent rect. 21 2
378 245.60 temperature 20 1440 < th dose independent rect. 20 5
385 245.67 temperature 20 1440 < th dose independent rect. 21 2
388 245.67 temperature 30 720 < th dose dependent rect. 1 6
500 247.13 temperature 20 720 > th dose independent rect. 5 23
528 247.48 temperature 20 720 > th dose independent no NA NA
547 247.64 temperature 20 720 < th dose independent no NA NA
569 248.17 temperature 20 720 < th dose independent rect. 5 23
624 248.99 temperature 10 720 > th dose dependent rect. 24 9
751 250.71 temperature 20 720 > th dose independent rect. 8 23
770 251.01 temperature 20 720 > th dose independent rect. 5 4
786 251.25 humidity 70 14400 < th dose dependent rect. 21 10
827 251.94 atmosphere 995 43200 < th dose dependent rect. 14 9
842 252.12 temperature 15 720 > th dose dependent rect. 23 5