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Os12g0636800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ubiquitin-conjugating enzyme, E2 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.6 (0.016) R2 : 0.124
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.271 (0.0336) R2dN8 : 0.161 R2N8 : 0.124
σ : 0.301
deviance : 41.51
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
18.99 0.205 13.7 -1.32 0.487 -0.457 0.403 5.94 0.12 0.367 29.84 3707 -- --
22.48 0.221 13.6 -0.252 0.467 0.153 0.274 -- 0.305 0.375 23.9 16122 -- --
19.59 0.206 13.7 -1.34 0.481 -0.442 -- 5.82 0.0975 0.259 29.7 3567 -- --
21.66 0.217 13.6 -0.31 0.47 0.247 -- -- 0.192 0.0752 32 3532 -- --
32.64 0.268 13.6 -0.34 -- 0.3 -- 0.156 0.24 -- 29.5 3653 -- --
23.31 0.226 13.6 -0.375 0.475 -- 0.315 -- 0.224 0.214 -- -- -- --
23.73 0.228 13.6 -0.387 0.474 -- -- -- 0.222 0.125 -- -- -- --
32.66 0.267 13.6 -0.322 -- 0.309 -- -- 0.244 -- 29.5 3653 -- --
21.62 0.217 13.6 -- 0.475 0.341 -- -- 0.381 0.0109 31.5 44868 -- --
37.87 0.288 13.6 -0.371 -- -- -- -- 0.229 -- -- -- -- --
27.67 0.246 13.6 -- 0.469 -- -- -- 0.265 0.0799 -- -- -- --
32.15 0.265 13.6 -- -- 0.311 -- -- 0.351 -- 26.68 47520 -- --
41.51 0.301 13.6 -- -- -- -- -- 0.271 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.84 wind 1 43200 > th dose independent rect. 10 1
2 17.90 wind 1 43200 < th dose independent rect. 10 1
3 17.98 humidity 90 14400 > th dose dependent rect. 5 1
4 17.99 wind 1 43200 < th dose independent rect. 2 2
6 18.09 humidity 90 14400 > th dose dependent rect. 4 3
7 18.13 wind 1 43200 > th dose independent rect. 2 2
8 18.13 temperature 25 43200 < th dose dependent rect. 9 2
13 18.14 radiation 1 43200 < th dose dependent rect. 24 5
23 18.18 radiation 1 43200 < th dose dependent rect. 4 1
30 18.20 temperature 10 4320 > th dose dependent rect. 9 1
40 18.22 temperature 30 4320 < th dose dependent rect. 8 2
46 18.23 temperature 25 43200 < th dose dependent rect. 8 14
58 18.25 temperature 25 43200 < th dose dependent rect. 19 1
68 18.26 radiation 1 43200 > th dose independent rect. 13 1
69 18.26 radiation 1 43200 < th dose independent rect. 12 2
73 18.26 radiation 1 43200 < th dose dependent rect. 12 2
86 18.27 wind 1 43200 > th dose independent rect. 10 15
101 18.28 radiation 1 43200 < th dose independent rect. 10 5
102 18.28 temperature 25 43200 < th dose dependent sin 20 NA
115 18.28 radiation 1 43200 < th dose dependent rect. 10 5
131 18.29 wind 1 43200 > th dose independent rect. 2 4
132 18.29 radiation 1 43200 > th dose independent rect. 10 5
150 18.29 radiation 1 4320 < th dose dependent rect. 18 14
159 18.30 temperature 20 43200 > th dose independent rect. 3 19
208 18.32 temperature 20 43200 > th dose independent rect. 9 20
229 18.33 temperature 20 43200 > th dose independent sin 16 NA
251 18.33 humidity 90 43200 > th dose dependent rect. 9 4
271 18.34 temperature 20 43200 > th dose independent rect. 16 5
274 18.34 humidity 90 14400 > th dose independent rect. 22 10
277 18.34 temperature 20 43200 > th dose independent rect. 13 16
279 18.34 temperature 20 43200 > th dose independent rect. 10 17
286 18.34 temperature 20 43200 < th dose independent rect. 3 19
319 18.35 temperature 20 43200 > th dose independent no NA NA
322 18.35 temperature 20 43200 > th dose independent rect. 17 3
329 18.35 temperature 20 43200 > th dose independent rect. 16 11
348 18.35 temperature 20 43200 > th dose independent rect. 16 20
350 18.35 temperature 20 43200 > th dose independent rect. 14 21
361 18.35 temperature 20 43200 > th dose independent rect. 11 23
412 18.36 temperature 20 43200 > th dose independent rect. 16 18
423 18.36 temperature 20 43200 < th dose independent rect. 9 20
451 18.36 humidity 80 43200 > th dose dependent rect. 12 1
472 18.37 temperature 20 43200 < th dose independent sin 16 NA
474 18.37 humidity 90 43200 < th dose independent rect. 10 3
476 18.37 temperature 20 43200 < th dose independent rect. 17 5
493 18.37 wind 1 43200 < th dose independent rect. 10 15
504 18.37 temperature 20 43200 < th dose independent rect. 11 18
571 18.38 temperature 20 43200 < th dose independent rect. 15 14
600 18.38 temperature 20 43200 < th dose independent rect. 15 21
639 18.39 temperature 20 43200 < th dose independent no NA NA
651 18.39 temperature 20 43200 < th dose independent rect. 16 12
675 18.39 temperature 20 43200 < th dose independent rect. 16 18
689 18.39 temperature 20 43200 < th dose independent rect. 12 21
720 18.39 wind 1 43200 < th dose dependent rect. 2 5
735 18.40 temperature 20 43200 > th dose independent rect. 20 3
795 18.40 temperature 25 43200 < th dose dependent no NA NA
796 18.40 radiation 1 43200 < th dose dependent rect. 6 1
813 18.40 temperature 25 43200 < th dose dependent rect. 15 22
816 18.40 temperature 25 43200 < th dose dependent rect. 13 23
830 18.41 temperature 20 43200 > th dose independent rect. 21 1
831 18.41 temperature 25 43200 < th dose independent rect. 12 1
833 18.41 temperature 20 43200 < th dose independent rect. 21 2
893 18.41 humidity 90 43200 > th dose dependent rect. 10 1