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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0635400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : VQ domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.5 (0.0401) R2 : 0.139
β1 : 0.875 (0.154) R2dD : 0.0704 R2D : -0.00546
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.36 (0.17) R2dE : 0.151 R2E : 0.0592
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.256 (0.09) R2dN8 : 0.0228 R2N8 : -0.0256
σ : 0.738
deviance : 250.77
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 15.92
memory length : 1179
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
241.86 0.731 3.46 1.19 0.598 -1.88 -0.0703 2.02 0.367 16.3 15.51 347 -- --
244.31 0.728 3.5 0.857 0.591 -1.87 0.372 -- 0.279 16.5 15.06 369 -- --
241.87 0.724 3.46 1.18 0.598 -1.88 -- 1.96 0.364 16.3 15.48 346 -- --
244.68 0.729 3.5 0.855 0.59 -1.85 -- -- 0.272 16.4 15.08 356 -- --
250.15 0.737 3.48 1.06 -- -1.46 -- 0.904 0.301 -- 9.964 1156 -- --
284.14 0.79 3.56 0.438 0.169 -- 0.0411 -- -0.00208 12.1 -- -- -- --
284.14 0.789 3.56 0.44 0.169 -- -- -- -0.00189 12.1 -- -- -- --
250.77 0.738 3.5 0.875 -- -1.36 -- -- 0.256 -- 15.92 1179 -- --
261.88 0.754 3.53 -- 0.468 -1.44 -- -- 0.131 16.2 15.4 366 -- --
285.94 0.79 3.56 0.434 -- -- -- -- -0.00433 -- -- -- -- --
289.24 0.796 3.57 -- 0.163 -- -- -- -0.0509 11.9 -- -- -- --
267.23 0.761 3.54 -- -- -1.12 -- -- 0.094 -- 15.41 817 -- --
290.92 0.796 3.57 -- -- -- -- -- -0.0525 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 234.38 wind 9 43200 > th dose dependent rect. 17 16
2 234.45 wind 9 43200 > th dose dependent rect. 18 14
3 234.65 wind 9 43200 > th dose independent rect. 18 16
4 235.22 wind 9 43200 > th dose dependent sin 11 NA
5 235.44 wind 9 43200 > th dose dependent rect. 14 20
9 236.06 wind 9 43200 < th dose independent rect. 18 16
10 236.12 wind 9 43200 > th dose dependent rect. 17 22
23 237.15 wind 9 43200 > th dose dependent rect. 17 19
33 237.72 wind 9 43200 > th dose dependent rect. 20 13
40 237.97 wind 9 43200 > th dose dependent rect. 22 23
42 238.07 wind 9 43200 > th dose dependent rect. 4 17
50 238.17 wind 9 43200 > th dose dependent rect. 4 21
58 238.22 wind 9 43200 > th dose dependent no NA NA
83 238.33 temperature 10 270 > th dose dependent rect. 24 23
86 238.34 wind 9 43200 > th dose dependent rect. 20 23
87 238.35 wind 9 43200 > th dose independent rect. 20 14
142 239.17 wind 9 43200 > th dose independent sin 9 NA
164 239.69 wind 7 43200 > th dose independent rect. 6 1
168 239.72 wind 9 43200 < th dose independent rect. 20 14
192 240.04 wind 9 43200 > th dose dependent rect. 22 17
193 240.06 wind 9 43200 > th dose dependent sin 0 NA
197 240.11 wind 9 43200 > th dose dependent rect. 4 11
200 240.12 wind 9 43200 > th dose dependent rect. 24 15
208 240.18 wind 7 43200 < th dose independent rect. 6 1
210 240.20 wind 9 43200 > th dose dependent rect. 7 8
218 240.28 wind 9 43200 > th dose independent rect. 18 21
222 240.32 wind 7 43200 > th dose dependent rect. 6 1
261 240.80 wind 9 43200 > th dose independent rect. 20 19
265 240.87 wind 9 43200 > th dose independent rect. 14 21
268 240.96 wind 9 43200 < th dose independent rect. 18 21
270 241.02 wind 9 43200 < th dose independent sin 9 NA
274 241.05 wind 9 43200 > th dose independent rect. 6 9
280 241.08 temperature 10 720 > th dose dependent rect. 17 21
294 241.21 atmosphere 995 43200 < th dose dependent rect. 5 13
297 241.21 atmosphere 995 43200 < th dose dependent rect. 7 15
303 241.26 wind 9 43200 < th dose independent rect. 6 9
306 241.29 atmosphere 995 43200 < th dose dependent rect. 7 11
314 241.30 wind 9 43200 < th dose independent rect. 20 19
323 241.41 wind 9 43200 > th dose independent rect. 23 16
358 241.69 temperature 15 270 > th dose dependent rect. 12 23
359 241.70 wind 9 43200 < th dose independent rect. 23 16
372 241.83 atmosphere 995 43200 > th dose independent rect. 7 6
376 241.87 atmosphere 995 43200 < th dose dependent sin 23 NA
380 241.88 temperature 10 720 > th dose dependent rect. 22 16
390 241.95 wind 9 43200 < th dose independent rect. 14 21
419 242.20 wind 9 43200 > th dose independent rect. 6 6
454 242.37 temperature 30 270 < th dose dependent rect. 7 20
495 242.62 temperature 15 270 > th dose dependent no NA NA
509 242.73 wind 9 43200 > th dose independent rect. 23 22
512 242.73 temperature 30 270 < th dose dependent rect. 7 22
523 242.86 wind 9 43200 > th dose independent rect. 5 19
525 242.87 wind 9 43200 > th dose independent rect. 5 16
546 242.94 temperature 30 90 < th dose dependent rect. 10 17
594 243.15 temperature 15 10 > th dose dependent rect. 2 23
596 243.16 wind 9 43200 > th dose independent rect. 20 23
607 243.23 wind 9 43200 > th dose independent rect. 23 20
650 243.37 wind 9 43200 > th dose independent no NA NA
667 243.42 temperature 30 270 < th dose dependent rect. 5 22
680 243.57 atmosphere 995 43200 < th dose independent rect. 7 8
729 243.74 temperature 30 270 < th dose dependent rect. 20 22
751 243.88 wind 9 43200 < th dose independent rect. 23 22
761 243.92 temperature 30 10 < th dose dependent rect. 11 17
799 244.05 wind 9 43200 < th dose independent rect. 5 19
814 244.09 temperature 30 720 < th dose dependent rect. 17 19
828 244.13 wind 9 43200 < th dose independent rect. 5 16
838 244.16 wind 7 43200 > th dose dependent rect. 9 1
862 244.25 atmosphere 1000 43200 < th dose dependent rect. 11 2
872 244.30 wind 9 43200 < th dose independent rect. 23 20
876 244.31 humidity 90 14400 > th dose dependent rect. 22 1
899 244.41 temperature 30 720 < th dose dependent rect. 19 17
956 244.63 wind 9 43200 < th dose independent no NA NA
958 244.63 temperature 15 720 > th dose dependent sin 5 NA