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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0633600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF221 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.84 (0.0416) R2 : 0.855
β1 : -- (--) R2dD : -- R2D : --
β2 : 5.6 (0.109) R2dC : 0.903 R2C : 0.827
β3 : -2.35 (0.265) R2dE : 0.0276 R2E : -0.05
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0687 (0.0884) R2dN8 : 0.000243 R2N8 : -0.00462
σ : 0.778
deviance : 279.32
__
_____
C
peak time of C : 8.07
E
wheather : radiation
threshold : 16.14
memory length : 73
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 7.4
open length of G : 7.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
264.38 0.764 5.84 0.562 5.61 -2.19 -0.256 3.2 0.11 8.07 16.07 70 7.4 7.93
270.18 0.766 5.83 0.598 5.59 -2.28 0.011 -- 0.128 8.09 16.06 70 7.4 7.79
264.5 0.757 5.84 0.555 5.6 -2.2 -- 3.11 0.111 8.08 16 69 7.42 7.92
270.1 0.765 5.83 0.583 5.61 -2.29 -- -- 0.133 8.07 16.08 70 7.38 7.73
550.72 1.1 6.01 0.664 -- -3.65 -- -0.209 0.0495 -- 77.46 3 13.1 10.9
311.49 0.827 5.8 0.705 5.42 -- 0.122 -- 0.268 7.89 -- -- -- --
311.53 0.827 5.81 0.709 5.42 -- -- -- 0.268 7.89 -- -- -- --
453.42 0.992 5.99 0.58 -- -3.63 -- -- 0.0921 -- 89.69 6 13.3 12.7
279.32 0.778 5.84 -- 5.6 -2.35 -- -- 0.0687 8.07 16.14 73 7.4 7.7
1908.95 2.04 5.94 0.768 -- -- -- -- 0.34 -- -- -- -- --
324.77 0.843 5.82 -- 5.43 -- -- -- 0.189 7.88 -- -- -- --
395.15 0.926 6.04 -- -- -4.27 -- -- 0.395 -- 158.2 261 10.7 13.8
1924.52 2.05 5.96 -- -- -- -- -- 0.255 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 269.62 radiation 20.0 90 < th dose dependent rect. 7 8
3 273.78 temperature 30.0 90 < th dose dependent rect. 17 14
6 274.48 radiation 20.0 90 < th dose dependent rect. 9 6
10 275.29 temperature 20.0 270 > th dose independent rect. 20 6
23 277.23 humidity 50.0 10 > th dose dependent rect. 7 10
30 278.47 radiation 40.0 90 < th dose independent rect. 7 10
32 278.79 atmosphere 995.0 90 > th dose dependent rect. 17 14
42 279.68 temperature 20.0 10 > th dose independent rect. 23 5
60 280.32 wind 1.0 90 < th dose independent rect. 23 3
78 280.96 temperature 20.0 270 > th dose independent rect. 23 1
90 281.44 wind 9.0 90 < th dose independent rect. 7 10
94 281.56 temperature 25.0 720 < th dose dependent rect. 17 2
96 281.60 wind 1.0 90 < th dose dependent rect. 23 3
102 281.87 radiation 1.0 720 < th dose dependent rect. 17 12
107 282.00 temperature 30.0 90 < th dose independent rect. 17 14
122 282.37 atmosphere 995.0 90 > th dose independent rect. 17 14
125 282.39 humidity 50.0 90 > th dose independent rect. 17 14
128 282.50 humidity 60.0 10 > th dose dependent rect. 23 16
151 282.96 radiation 1.0 720 < th dose dependent rect. 17 3
155 283.02 radiation 20.0 90 < th dose independent rect. 7 8
157 283.04 wind 1.0 10 > th dose independent rect. 17 14
165 283.15 humidity 50.0 10 > th dose dependent rect. 23 18
167 283.20 wind 1.0 90 > th dose independent rect. 17 14
170 283.23 wind 1.0 90 > th dose independent rect. 7 10
172 283.24 temperature 10.0 90 > th dose independent rect. 7 10
173 283.24 atmosphere 1015.0 90 < th dose independent rect. 7 10
174 283.24 temperature 10.0 90 > th dose independent rect. 17 14
175 283.24 radiation 40.0 90 < th dose independent rect. 17 14
177 283.26 radiation 30.0 270 < th dose dependent rect. 16 14
178 283.30 atmosphere 995.0 90 > th dose independent rect. 7 10
179 283.30 wind 9.0 90 < th dose independent rect. 17 14
184 283.40 temperature 20.0 10 > th dose independent rect. 7 21
190 283.47 radiation 20.0 270 < th dose independent rect. 15 15
193 283.50 temperature 15.0 270 > th dose dependent rect. 20 6
202 283.63 temperature 10.0 270 > th dose dependent rect. 6 20
211 283.72 humidity 50.0 10 > th dose independent rect. 7 10
214 283.76 precipitation 0.1 90 < th dose independent rect. 7 10
215 283.76 precipitation 0.1 90 < th dose dependent rect. 7 10
230 283.92 temperature 25.0 10 < th dose dependent rect. 17 5
231 283.93 temperature 20.0 10 > th dose independent rect. 13 15
244 284.06 temperature 20.0 10 > th dose independent rect. 20 8
282 284.36 precipitation 0.1 90 < th dose independent rect. 17 14
283 284.36 precipitation 0.1 90 < th dose dependent rect. 17 14
290 284.43 humidity 50.0 90 > th dose independent rect. 7 10
306 284.64 radiation 10.0 90 < th dose independent rect. 9 6
316 284.72 wind 1.0 90 < th dose independent rect. 15 11
324 284.75 temperature 20.0 90 > th dose independent rect. 7 21
365 285.16 temperature 20.0 90 > th dose independent rect. 12 15
385 285.36 radiation 30.0 90 < th dose dependent rect. 22 16
409 285.59 wind 1.0 270 > th dose independent rect. 15 14
414 285.62 temperature 10.0 1440 > th dose independent rect. 8 10
418 285.62 temperature 10.0 1440 > th dose independent rect. 18 14
421 285.62 humidity 50.0 1440 > th dose independent rect. 18 14
450 285.83 wind 1.0 90 < th dose independent rect. 17 9
522 286.25 humidity 80.0 90 > th dose dependent rect. 23 4
571 286.53 humidity 80.0 30 > th dose independent rect. 7 9
572 286.53 temperature 15.0 270 > th dose dependent rect. 23 1
596 286.64 temperature 15.0 10 > th dose dependent rect. 23 5
608 286.70 humidity 70.0 30 > th dose dependent rect. 7 21
634 286.90 temperature 20.0 10 < th dose independent rect. 19 11
658 287.01 wind 1.0 90 > th dose independent sin 16 NA
660 287.01 radiation 1.0 720 < th dose independent rect. 17 12
679 287.12 radiation 10.0 10 < th dose dependent rect. 23 18
701 287.21 temperature 20.0 720 > th dose independent rect. 14 9
703 287.25 temperature 25.0 270 < th dose independent rect. 17 2
759 287.46 atmosphere 1005.0 10 > th dose independent rect. 18 14
861 287.86 wind 5.0 720 < th dose independent rect. 5 5
863 287.86 wind 1.0 90 < th dose dependent rect. 15 11
887 287.94 atmosphere 1005.0 720 > th dose independent rect. 19 7
893 287.96 atmosphere 1005.0 720 > th dose independent rect. 20 2
901 287.98 temperature 20.0 90 < th dose independent rect. 18 12
918 288.05 humidity 80.0 10 > th dose dependent rect. 12 2
919 288.05 wind 3.0 10 < th dose dependent rect. 23 4
962 288.20 radiation 20.0 90 < th dose independent rect. 22 16
995 288.31 radiation 20.0 10 < th dose dependent rect. 7 21
1000 288.32 radiation 40.0 90 < th dose dependent rect. 11 6