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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0633400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Pathogenesis-related protein PR-1 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0312) R2 : 0.00399
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0889 (0.0657) R2dN8 : 0.00516 R2N8 : 0.00399
σ : 0.588
deviance : 158.58
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
139.81 0.556 2.9 0.381 0.2 -2.53 0.37 -5.11 0.149 8.26 1015 1763 -- --
146.34 0.563 2.88 0.427 0.191 -0.919 0.533 -- 0.159 8.81 1014 1389 -- --
138.55 0.548 2.9 0.45 0.213 -2.6 -- -5.3 0.143 7.44 1016 1873 -- --
146.68 0.564 2.88 0.459 0.213 -0.793 -- -- 0.171 7.41 1014 1976 -- --
139.73 0.551 2.91 0.378 -- -3.37 -- -6.69 0.157 -- 1016 1871 -- --
150.85 0.576 2.89 0.408 0.194 -- 0.483 -- 0.135 9.18 -- -- -- --
151.46 0.576 2.89 0.422 0.208 -- -- -- 0.133 8.01 -- -- -- --
147.75 0.566 2.88 0.518 -- -0.636 -- -- 0.202 -- 1012 2419 -- --
151.53 0.573 2.89 -- 0.219 -0.647 -- -- 0.118 7.53 1014 2440 -- --
153.82 0.58 2.89 0.424 -- -- -- -- 0.136 -- -- -- -- --
156.16 0.585 2.9 -- 0.211 -- -- -- 0.0863 7.87 -- -- -- --
154.12 0.578 2.89 -- -- -0.631 -- -- 0.119 -- 1014 2440 -- --
158.58 0.588 2.9 -- -- -- -- -- 0.0889 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.81 atmosphere 1000 90 < th dose independent rect. 18 2
2 132.81 atmosphere 1000 90 < th dose dependent rect. 18 2
14 134.15 atmosphere 1010 720 > th dose dependent rect. 24 4
15 134.30 atmosphere 1010 720 > th dose dependent rect. 1 2
19 134.45 atmosphere 1015 1440 < th dose independent rect. 13 6
20 134.49 atmosphere 1015 1440 < th dose independent rect. 13 3
49 135.28 atmosphere 1015 1440 > th dose independent rect. 13 2
55 135.49 humidity 70 90 < th dose independent rect. 18 1
56 135.51 atmosphere 1010 1440 > th dose dependent rect. 12 1
73 135.72 atmosphere 1010 720 > th dose dependent rect. 3 1
141 137.13 atmosphere 1010 720 > th dose independent rect. 1 2
170 137.90 atmosphere 1015 1440 < th dose independent rect. 9 11
175 137.95 atmosphere 1015 1440 < th dose independent rect. 4 16
176 137.95 atmosphere 1015 1440 < th dose independent rect. 24 20
178 137.96 radiation 10 30 < th dose independent rect. 11 1
201 138.14 atmosphere 1015 1440 < th dose independent rect. 9 7
220 138.19 atmosphere 1015 1440 < th dose independent rect. 24 16
224 138.20 atmosphere 1015 1440 < th dose independent rect. 4 12
253 138.27 temperature 25 30 < th dose independent rect. 6 9
256 138.27 temperature 25 10 < th dose dependent rect. 11 3
262 138.33 atmosphere 1015 1440 < th dose independent sin 0 NA
280 138.63 radiation 10 30 < th dose dependent rect. 11 1
330 139.11 temperature 25 10 < th dose dependent rect. 12 1
350 139.30 temperature 25 30 < th dose independent rect. 10 5
352 139.33 temperature 25 10 < th dose independent rect. 12 1
367 139.48 atmosphere 1015 1440 > th dose independent sin 23 NA
401 139.69 atmosphere 1015 1440 > th dose independent rect. 1 16
432 139.70 atmosphere 1015 1440 > th dose independent rect. 2 13
516 139.96 humidity 70 90 < th dose dependent rect. 18 1
599 140.52 atmosphere 995 270 > th dose independent sin 9 NA
630 140.64 radiation 20 90 < th dose independent rect. 19 18
640 140.66 temperature 25 90 < th dose dependent rect. 5 9
641 140.66 atmosphere 1010 1440 > th dose dependent rect. 4 14
672 140.76 temperature 25 30 > th dose independent rect. 8 11
685 140.83 temperature 25 270 < th dose dependent rect. 2 12
689 140.87 atmosphere 1015 14400 < th dose independent rect. 13 1
694 140.88 atmosphere 1015 14400 > th dose independent rect. 12 1
719 140.92 atmosphere 1010 1440 > th dose dependent sin 0 NA
730 140.94 atmosphere 1015 14400 > th dose dependent rect. 11 1
736 140.96 humidity 90 720 < th dose independent rect. 4 1
820 141.05 humidity 70 14400 > th dose independent rect. 8 1
854 141.09 humidity 70 14400 < th dose independent rect. 8 1
888 141.12 humidity 70 14400 > th dose independent rect. 4 5
889 141.12 humidity 70 14400 > th dose independent rect. 1 8
892 141.12 humidity 70 14400 > th dose independent rect. 23 10
904 141.13 radiation 10 30 < th dose independent rect. 6 8
917 141.14 atmosphere 1015 14400 < th dose independent sin 21 NA
943 141.16 atmosphere 1010 720 < th dose independent rect. 22 6
962 141.17 atmosphere 1015 14400 > th dose independent sin 22 NA
988 141.18 atmosphere 1015 14400 > th dose dependent sin 23 NA