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Os12g0632900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0252) R2 : 0.635
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.18 (0.0602) R2dC : 0.284 R2C : 0.225
β3 : -1.59 (0.0758) R2dE : 0.454 R2E : 0.207
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.657 (0.0567) R2dN8 : 0.138 R2N8 : -0.0556
σ : 0.465
deviance : 99.65
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C
peak time of C : 1.85
E
wheather : temperature
threshold : 16.22
memory length : 23703
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
94.53 0.457 10.5 -0.488 1.1 -1.2 1.19 3.67 0.219 1.99 25.3 4608 -- --
95 0.454 10.5 -1.19 1.13 -0.888 1.26 -- 0.353 2.23 22.57 11471 -- --
99.95 0.466 10.5 -0.525 1.11 -1.19 -- 3.62 0.214 1.93 25.2 4607 -- --
95.12 0.454 10.5 -0.555 1.12 -1.31 -- -- 0.509 1.99 17.5 23518 -- --
122.67 0.519 10.5 -1.2 -- -1.9 -- 2.15 0.179 -- 25.2 4607 -- --
121.06 0.516 10.6 -1.67 1.09 -- 1.14 -- -0.008 2.11 -- -- -- --
125.96 0.526 10.6 -1.71 1.09 -- -- -- -0.0144 2.05 -- -- -- --
122.4 0.518 10.5 -1.32 -- -1.78 -- -- 0.298 -- 20.2 4684 -- --
99.65 0.465 10.5 -- 1.18 -1.59 -- -- 0.657 1.85 16.22 23703 -- --
196.88 0.656 10.6 -1.66 -- -- -- -- 0.0112 -- -- -- -- --
202.72 0.666 10.6 -- 1.05 -- -- -- 0.176 2.01 -- -- -- --
166.25 0.602 10.5 -- -- -2.06 -- -- 0.483 -- 20.2 4684 -- --
269.69 0.767 10.5 -- -- -- -- -- 0.196 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 85.73 humidity 90.0 43200 > th dose independent rect. 1 7
3 85.81 temperature 15.0 43200 > th dose independent rect. 24 1
4 85.87 temperature 15.0 43200 < th dose dependent rect. 1 1
9 86.20 radiation 40.0 43200 < th dose independent rect. 2 6
10 86.21 radiation 40.0 43200 < th dose independent rect. 6 2
14 86.23 radiation 40.0 43200 < th dose independent rect. 4 4
19 86.26 radiation 40.0 43200 < th dose independent rect. 18 14
23 86.33 radiation 40.0 43200 < th dose independent rect. 20 12
24 86.35 radiation 40.0 43200 < th dose independent rect. 22 10
36 86.65 radiation 30.0 43200 > th dose dependent rect. 7 1
53 86.69 wind 1.0 43200 < th dose dependent rect. 16 3
57 86.78 humidity 90.0 43200 < th dose independent rect. 24 11
64 86.86 humidity 90.0 43200 > th dose independent rect. 21 7
73 86.97 humidity 90.0 43200 > th dose independent sin 9 NA
80 87.03 humidity 90.0 43200 > th dose independent rect. 13 16
82 87.05 humidity 80.0 43200 > th dose dependent rect. 1 14
84 87.06 humidity 80.0 43200 > th dose dependent rect. 24 16
107 87.25 humidity 90.0 43200 > th dose dependent rect. 2 5
113 87.29 humidity 90.0 43200 > th dose independent rect. 17 12
126 87.35 temperature 15.0 43200 > th dose independent rect. 2 1
128 87.35 humidity 90.0 43200 > th dose independent rect. 18 10
134 87.36 humidity 90.0 43200 > th dose dependent rect. 24 8
141 87.38 humidity 90.0 43200 > th dose dependent rect. 4 1
161 87.47 temperature 30.0 14400 < th dose independent rect. 15 1
191 87.59 temperature 15.0 43200 < th dose independent rect. 24 3
192 87.59 humidity 90.0 43200 > th dose independent rect. 23 16
195 87.60 temperature 15.0 43200 < th dose independent rect. 24 1
201 87.65 humidity 90.0 43200 < th dose independent rect. 24 15
204 87.66 radiation 20.0 4320 < th dose dependent rect. 16 1
230 87.78 humidity 80.0 43200 > th dose dependent sin 5 NA
235 87.80 humidity 90.0 43200 < th dose independent sin 8 NA
249 87.84 radiation 20.0 4320 < th dose dependent rect. 16 3
253 87.85 radiation 20.0 4320 < th dose dependent rect. 16 7
269 87.90 humidity 90.0 43200 > th dose dependent rect. 24 1
302 87.99 radiation 1.0 4320 > th dose dependent rect. 16 1
303 87.99 humidity 80.0 43200 > th dose dependent rect. 9 21
308 88.02 temperature 30.0 14400 > th dose independent rect. 15 1
326 88.05 humidity 90.0 43200 > th dose dependent rect. 13 16
344 88.08 humidity 90.0 43200 > th dose dependent rect. 13 18
352 88.10 humidity 90.0 43200 < th dose independent rect. 13 16
361 88.12 radiation 40.0 4320 < th dose dependent rect. 16 1
380 88.14 humidity 80.0 43200 > th dose dependent rect. 17 22
396 88.20 humidity 90.0 43200 < th dose independent rect. 17 11
409 88.23 humidity 90.0 43200 < th dose independent rect. 16 13
411 88.23 radiation 40.0 4320 < th dose dependent rect. 16 4
420 88.24 precipitation 0.1 43200 > th dose dependent rect. 4 1
433 88.26 humidity 90.0 43200 < th dose independent rect. 21 6
436 88.26 radiation 1.0 43200 < th dose dependent rect. 7 5
437 88.26 radiation 40.0 4320 < th dose dependent rect. 16 7
443 88.27 humidity 90.0 43200 > th dose dependent sin 9 NA
451 88.28 radiation 1.0 4320 > th dose dependent rect. 16 3
532 88.38 radiation 1.0 43200 > th dose independent rect. 8 4
540 88.39 humidity 90.0 43200 < th dose independent rect. 17 15
542 88.39 radiation 1.0 43200 < th dose dependent rect. 7 2
546 88.39 humidity 80.0 43200 > th dose dependent rect. 14 22
564 88.42 radiation 40.0 4320 < th dose dependent rect. 16 11
590 88.46 radiation 1.0 43200 < th dose independent rect. 8 4
616 88.48 humidity 80.0 43200 > th dose dependent no NA NA
806 88.79 precipitation 0.1 43200 > th dose independent rect. 4 1
811 88.80 precipitation 0.1 43200 < th dose independent rect. 4 1
813 88.80 precipitation 0.1 43200 < th dose dependent rect. 4 1
814 88.81 precipitation 0.1 43200 > th dose independent rect. 6 1
819 88.81 precipitation 0.1 43200 > th dose dependent rect. 6 1
837 88.84 radiation 20.0 1440 < th dose dependent rect. 18 2
863 88.89 radiation 1.0 43200 > th dose independent rect. 10 2
898 88.94 radiation 1.0 43200 < th dose independent rect. 10 2
954 89.05 humidity 80.0 43200 > th dose dependent rect. 2 23
966 89.08 radiation 40.0 43200 < th dose independent rect. 15 1
969 89.08 temperature 20.0 43200 < th dose dependent rect. 21 2
971 89.09 radiation 40.0 43200 < th dose independent rect. 15 4
974 89.09 radiation 40.0 43200 < th dose independent rect. 15 8
980 89.10 radiation 40.0 43200 < th dose independent rect. 15 6