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Os12g0632800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0417) R2 : 0.857
β1 : 2.55 (0.152) R2dD : 0.0937 R2D : -0.0293
β2 : 0.833 (0.177) R2dC : 0.0538 R2C : -0.203
β3 : -2.23 (0.267) R2dE : 0.0432 R2E : -0.211
β4 : -0.249 (0.646) R2dD*C : 0.000477 R2D*C : -0.18
β5 : 1.35 (0.996) R2dD*E : 0.00284 R2D*E : -0.177
γ1 : -3.6 (0.0856) R2dN8 : 0.815 R2N8 : 0.783
σ : 0.686
deviance : 213.09
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_____
C
peak time of C : 0.113
E
wheather : radiation
threshold : 23.71
memory length : 1441
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 19
open length of G : 10

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
213.09 0.686 10.2 2.55 0.833 -2.23 -0.249 1.35 -3.6 0.113 23.71 1441 19 10
238.28 0.719 10.2 2.55 0.833 -1.28 -0.249 -- -3.6 0.113 23.71 1441 19 10
230.96 0.708 10.2 2.55 0.833 -1.28 -- 1.35 -3.6 0.113 23.71 1441 19 10
235.7 0.715 10.2 2.57 0.833 -1.32 -- -- -3.6 0.0847 24.82 1441 19 10
235.43 0.715 10.2 2.66 -- -0.794 -- 1.18 -3.61 -- 20.01 47520 19.3 9.72
256.19 0.75 10.3 1.83 0.0968 -- -0.541 -- -3.84 7.29 -- -- -- --
256.95 0.751 10.3 1.82 0.1 -- -- -- -3.84 6.39 -- -- -- --
233.3 0.711 10.2 3.2 -- -1.4 -- -- -3.4 -- 59.45 47520 19 10
337.95 0.861 10.3 -- 0.619 -0.508 -- -- -4.04 0.81 60.19 1441 19 10
257.47 0.75 10.3 1.82 -- -- -- -- -3.83 -- -- -- -- --
343.84 0.867 10.3 -- 0.127 -- -- -- -4.04 5.6 -- -- -- --
287.93 0.79 10.3 -- -- 1.72 -- -- -4.04 -- 98.44 47520 17.3 12.4
344.68 0.867 10.3 -- -- -- -- -- -4.03 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 214.29 radiation 20 1440 < th dose dependent rect. 19 10
8 217.91 radiation 1 1440 > th dose independent rect. 11 1
9 218.19 radiation 1 1440 > th dose independent rect. 8 5
10 218.36 radiation 1 1440 < th dose independent rect. 9 3
11 218.36 radiation 1 1440 < th dose dependent rect. 9 3
12 218.37 radiation 10 1440 < th dose independent rect. 19 10
15 218.59 radiation 1 1440 < th dose independent rect. 8 5
16 218.59 radiation 1 1440 < th dose dependent rect. 8 5
28 219.86 radiation 1 1440 < th dose dependent rect. 8 8
34 220.39 wind 7 4320 > th dose independent rect. 18 1
41 220.83 wind 7 4320 > th dose dependent rect. 18 1
42 220.87 radiation 10 4320 < th dose dependent rect. 3 2
48 221.01 wind 7 4320 < th dose independent rect. 17 2
50 221.07 radiation 10 1440 < th dose dependent rect. 23 6
74 221.99 wind 1 1440 < th dose independent rect. 5 1
81 222.55 radiation 10 4320 < th dose dependent rect. 1 4
97 223.17 wind 1 43200 < th dose independent rect. 4 20
98 223.19 wind 1 1440 > th dose independent rect. 5 1
114 223.78 humidity 50 14400 < th dose dependent rect. 10 1
118 223.90 radiation 1 1440 > th dose independent rect. 9 1
124 224.20 radiation 10 1440 < th dose independent rect. 23 6
169 225.15 wind 1 43200 > th dose independent rect. 4 20
174 225.20 wind 1 43200 < th dose dependent rect. 7 1
187 225.63 humidity 70 43200 < th dose independent rect. 8 1
191 225.71 humidity 70 43200 > th dose independent rect. 8 1
195 225.82 radiation 10 1440 < th dose independent rect. 3 2
197 225.83 wind 1 43200 < th dose dependent rect. 6 5
198 225.85 temperature 15 14400 < th dose independent rect. 24 1
217 226.27 wind 1 4320 < th dose dependent rect. 6 2
218 226.30 wind 7 4320 > th dose dependent rect. 15 4
219 226.31 temperature 15 14400 < th dose independent rect. 22 3
220 226.31 humidity 80 4320 > th dose dependent rect. 8 3
224 226.36 humidity 70 14400 < th dose dependent rect. 20 12
228 226.46 humidity 70 43200 > th dose independent rect. 1 8
235 226.57 humidity 80 4320 > th dose dependent rect. 10 1
241 226.65 humidity 70 14400 < th dose independent rect. 20 12
247 226.74 humidity 80 43200 > th dose dependent rect. 22 2
248 226.80 humidity 80 43200 > th dose dependent rect. 21 4
254 226.85 humidity 80 43200 > th dose dependent rect. 19 11
256 226.89 radiation 10 1440 < th dose independent rect. 1 4
262 226.93 radiation 40 43200 < th dose dependent rect. 23 6
265 226.97 temperature 15 14400 > th dose independent rect. 21 4
266 226.97 wind 1 43200 < th dose independent rect. 6 5
274 227.03 radiation 1 1440 > th dose independent rect. 4 1
284 227.03 radiation 1 1440 > th dose dependent rect. 4 1
301 227.08 humidity 50 14400 < th dose independent rect. 8 3
375 227.70 humidity 50 14400 > th dose independent rect. 18 16
378 227.73 humidity 70 14400 > th dose independent rect. 20 12
382 227.79 radiation 40 43200 < th dose dependent rect. 1 4
389 227.89 radiation 40 43200 < th dose dependent rect. 3 2
391 227.90 humidity 50 14400 > th dose independent rect. 8 2
396 227.92 humidity 70 43200 < th dose independent rect. 1 8
412 228.06 temperature 15 14400 > th dose independent rect. 9 2
419 228.08 wind 1 43200 < th dose independent rect. 5 14
441 228.22 wind 1 43200 > th dose independent rect. 4 15
445 228.26 humidity 50 14400 > th dose independent rect. 3 7
453 228.30 humidity 50 14400 > th dose independent rect. 23 11
459 228.33 humidity 50 14400 > th dose independent rect. 1 9
488 228.48 temperature 15 14400 > th dose independent rect. 24 1
489 228.48 humidity 80 43200 < th dose independent rect. 23 20
495 228.51 temperature 15 14400 < th dose independent rect. 9 18
497 228.52 humidity 80 43200 > th dose dependent sin 11 NA
505 228.59 humidity 90 14400 < th dose dependent rect. 6 1
511 228.61 temperature 15 14400 < th dose independent rect. 9 2
513 228.62 temperature 15 14400 > th dose independent rect. 9 18
523 228.66 humidity 60 14400 > th dose dependent rect. 5 2
525 228.66 wind 1 43200 < th dose dependent rect. 6 13
540 228.75 temperature 15 14400 > th dose independent rect. 9 5
551 228.87 wind 9 43200 > th dose dependent rect. 11 2
560 228.90 humidity 80 43200 < th dose independent rect. 24 18
566 228.92 humidity 70 43200 > th dose dependent rect. 12 18
567 228.93 humidity 70 14400 < th dose dependent rect. 6 2
584 228.98 wind 1 43200 < th dose dependent rect. 6 15
603 229.13 humidity 80 43200 > th dose independent rect. 23 20
609 229.17 temperature 15 14400 < th dose independent rect. 5 7
623 229.22 wind 9 43200 > th dose independent rect. 11 2
632 229.23 wind 1 43200 < th dose independent rect. 4 23
636 229.26 humidity 80 43200 > th dose dependent rect. 1 1
655 229.38 wind 9 43200 < th dose independent rect. 11 2
675 229.46 temperature 15 14400 < th dose dependent rect. 4 1
679 229.47 humidity 80 43200 > th dose independent rect. 24 18
691 229.53 temperature 15 14400 > th dose independent rect. 6 7
734 229.61 wind 1 43200 > th dose independent rect. 4 23
804 229.93 temperature 15 14400 < th dose independent rect. 21 16
812 229.97 radiation 1 43200 < th dose independent rect. 19 10
814 229.98 humidity 80 4320 > th dose independent rect. 10 1
838 230.04 temperature 15 14400 < th dose independent rect. 9 5
852 230.06 humidity 60 43200 < th dose dependent rect. 18 19
863 230.09 atmosphere 1015 14400 > th dose dependent rect. 20 1
867 230.11 radiation 1 43200 < th dose independent rect. 23 6
882 230.16 wind 9 43200 > th dose dependent rect. 11 5
912 230.28 humidity 90 4320 > th dose independent rect. 8 1
926 230.30 humidity 70 43200 > th dose dependent rect. 22 18
927 230.31 radiation 1 43200 < th dose independent rect. 1 4
934 230.33 radiation 1 43200 < th dose independent rect. 3 2