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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0632100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to ARL2 G-protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.9 (0.0384) R2 : 0.591
β1 : -0.774 (0.144) R2dD : 0.0293 R2D : -0.26
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.44 (0.166) R2dE : 0.242 R2E : -0.275
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -2.19 (0.0876) R2dN8 : 0.891 R2N8 : 0.354
σ : 0.704
deviance : 228.38
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.7
memory length : 216
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.13 0.689 4.88 -0.481 0.508 -2.49 1.23 -1.34 -2.12 21.6 28 87 -- --
217.56 0.687 4.9 -0.678 0.521 -2.43 1.09 -- -2.16 21.5 28.58 78 -- --
220.19 0.691 4.9 -0.63 0.53 -2.55 -- -0.862 -2.14 22.1 28.13 79 -- --
220.46 0.692 4.91 -0.766 0.552 -2.54 -- -- -2.18 22.6 29.12 65 -- --
226.89 0.702 4.88 -0.607 -- -2.49 -- -0.982 -2.15 -- 27.5 216 -- --
301.6 0.814 4.79 -0.13 0.734 -- 1.7 -- -1.66 17.7 -- -- -- --
308.41 0.822 4.79 -0.138 0.746 -- -- -- -1.65 17.4 -- -- -- --
228.38 0.704 4.9 -0.774 -- -2.44 -- -- -2.19 -- 27.7 216 -- --
234.38 0.713 4.87 -- 0.516 -2.21 -- -- -2.03 21.7 29.23 60 -- --
337.44 0.858 4.78 -0.163 -- -- -- -- -1.67 -- -- -- -- --
308.92 0.822 4.79 -- 0.749 -- -- -- -1.64 17.4 -- -- -- --
242.76 0.726 4.86 -- -- -2.18 -- -- -2.05 -- 28 206 -- --
338.14 0.858 4.78 -- -- -- -- -- -1.65 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 209.81 temperature 30.0 90 < th dose dependent rect. 11 23
2 209.86 temperature 20.0 270 > th dose dependent sin 9 NA
3 210.07 temperature 30.0 30 < th dose dependent rect. 7 23
4 210.20 temperature 30.0 90 < th dose dependent rect. 13 22
6 210.49 temperature 15.0 30 > th dose dependent rect. 8 23
8 211.17 temperature 20.0 270 > th dose dependent rect. 17 19
14 213.16 temperature 20.0 270 > th dose dependent rect. 19 15
15 213.57 temperature 15.0 270 > th dose dependent rect. 16 22
21 214.49 temperature 30.0 90 < th dose dependent rect. 23 22
28 215.55 temperature 30.0 90 < th dose dependent rect. 13 20
40 216.52 temperature 30.0 10 < th dose dependent rect. 13 23
47 216.85 temperature 30.0 30 < th dose dependent rect. 3 23
51 217.40 temperature 30.0 90 < th dose dependent no NA NA
69 218.22 temperature 30.0 90 < th dose dependent rect. 21 23
71 218.41 temperature 30.0 270 < th dose dependent sin 9 NA
76 218.50 temperature 30.0 30 < th dose dependent rect. 15 23
77 218.64 temperature 30.0 90 < th dose dependent rect. 15 18
105 220.09 temperature 30.0 30 < th dose dependent rect. 17 23
143 221.46 temperature 30.0 10 < th dose dependent rect. 1 23
152 221.68 temperature 25.0 90 < th dose dependent rect. 1 23
164 222.03 temperature 30.0 90 < th dose dependent rect. 19 23
262 224.49 temperature 15.0 30 > th dose dependent no NA NA
263 224.51 temperature 20.0 10 > th dose dependent rect. 6 23
277 224.74 temperature 25.0 30 < th dose dependent rect. 5 23
397 226.97 wind 9.0 43200 > th dose dependent rect. 18 3
440 227.69 temperature 10.0 270 > th dose dependent rect. 5 22
479 228.37 temperature 20.0 90 > th dose dependent rect. 19 23
521 229.16 wind 9.0 43200 > th dose independent rect. 18 3
578 230.45 humidity 90.0 43200 > th dose dependent rect. 13 2
581 230.49 wind 9.0 43200 < th dose independent rect. 18 3
586 230.56 temperature 25.0 90 < th dose dependent rect. 3 20
608 230.79 temperature 20.0 10 > th dose dependent rect. 21 23
610 230.80 temperature 20.0 30 > th dose dependent rect. 1 23
654 231.40 humidity 90.0 43200 > th dose independent rect. 13 2
700 232.09 temperature 30.0 270 < th dose dependent rect. 22 11
715 232.45 temperature 20.0 30 > th dose dependent rect. 11 23
736 232.83 temperature 25.0 1440 < th dose independent rect. 16 3
744 232.97 radiation 10.0 43200 < th dose independent rect. 8 1
752 233.11 temperature 25.0 1440 < th dose dependent rect. 17 4
755 233.13 temperature 25.0 1440 < th dose dependent rect. 18 2
794 233.63 temperature 25.0 720 < th dose dependent rect. 6 18
819 233.92 radiation 1.0 43200 < th dose independent rect. 18 4
835 234.03 temperature 25.0 1440 > th dose independent rect. 16 3
862 234.43 radiation 1.0 43200 > th dose independent rect. 18 1
884 234.57 radiation 1.0 43200 < th dose dependent rect. 4 1
887 234.59 wind 9.0 43200 > th dose dependent rect. 18 7
890 234.62 temperature 15.0 90 > th dose dependent rect. 8 19
928 235.03 wind 9.0 43200 > th dose dependent rect. 18 12
960 235.43 radiation 1.0 43200 < th dose dependent rect. 18 11
976 235.58 temperature 25.0 1440 > th dose independent rect. 15 5
996 235.80 precipitation 0.1 43200 > th dose dependent rect. 17 1