Os12g0630200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thaumatin, pathogenesis-related family protein.
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Os12g0630200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thaumatin, pathogenesis-related family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 523.38 | 1.07 | 4.17 | -3.94 | 0.625 | 4.35 | -0.0435 | -23.2 | 3.07 | 10.5 | 30.33 | 1485 | -- | -- |
| 571.26 | 1.11 | 3.74 | -0.357 | 0.207 | 1.41 | 0.455 | -- | 2.84 | 7.98 | 33.47 | 2802 | -- | -- |
| 522.67 | 1.06 | 4.17 | -3.94 | 0.616 | 4.59 | -- | -24.5 | 3.07 | 10.4 | 30.33 | 1517 | -- | -- |
| 544.11 | 1.09 | 3.71 | -0.0977 | 0.587 | 1.67 | -- | -- | 3.04 | 9.46 | 32.92 | 5635 | -- | -- |
| 542.64 | 1.08 | 4.16 | -3.81 | -- | 5.07 | -- | -26.8 | 3.05 | -- | 30.09 | 1697 | -- | -- |
| 680.01 | 1.22 | 3.79 | 0.447 | 0.484 | -- | -0.173 | -- | 2.73 | 9.83 | -- | -- | -- | -- |
| 680.12 | 1.22 | 3.79 | 0.44 | 0.485 | -- | -- | -- | 2.73 | 9.76 | -- | -- | -- | -- |
| 536.99 | 1.08 | 3.78 | -0.0716 | -- | 1.88 | -- | -- | 2.86 | -- | 30.09 | 6118 | -- | -- |
| 519.91 | 1.06 | 3.75 | -- | 0.567 | 1.9 | -- | -- | 2.87 | 9.48 | 30.4 | 6169 | -- | -- |
| 694.14 | 1.23 | 3.8 | 0.435 | -- | -- | -- | -- | 2.73 | -- | -- | -- | -- | -- |
| 685.22 | 1.22 | 3.8 | -- | 0.484 | -- | -- | -- | 2.68 | 9.69 | -- | -- | -- | -- |
| 537.1 | 1.08 | 3.77 | -- | -- | 1.88 | -- | -- | 2.88 | -- | 30.18 | 6116 | -- | -- |
| 699.14 | 1.23 | 3.82 | -- | -- | -- | -- | -- | 2.68 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 503.04 | temperature | 25 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 3 | 511.87 | radiation | 30 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 19 | 519.11 | radiation | 30 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 52 | 522.82 | temperature | 25 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 73 | 523.98 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 74 | 524.37 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 23 |
| 75 | 524.65 | temperature | 30 | 1440 | > th | dose dependent | sin | 5 | NA |
| 79 | 524.90 | temperature | 30 | 1440 | > th | dose dependent | sin | 9 | NA |
| 82 | 525.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 91 | 525.30 | temperature | 30 | 1440 | > th | dose dependent | rect. | 9 | 2 |
| 93 | 525.34 | temperature | 30 | 1440 | > th | dose dependent | rect. | 8 | 9 |
| 121 | 525.44 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 14 |
| 126 | 525.55 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 23 |
| 130 | 525.76 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 223 | 525.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 12 |
| 255 | 526.07 | temperature | 30 | 1440 | < th | dose independent | rect. | 19 | 16 |
| 291 | 526.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 6 | 5 |
| 292 | 526.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 10 |
| 343 | 527.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 8 |
| 350 | 527.26 | temperature | 25 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 395 | 528.09 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 436 | 528.88 | temperature | 30 | 1440 | > th | dose dependent | rect. | 14 | 3 |
| 449 | 529.29 | temperature | 15 | 90 | > th | dose dependent | rect. | 3 | 17 |
| 507 | 530.29 | humidity | 50 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 545 | 531.34 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 551 | 531.58 | wind | 1 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 555 | 531.67 | humidity | 50 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 556 | 531.86 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 636 | 533.62 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 639 | 533.91 | wind | 1 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 674 | 534.50 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 693 | 534.71 | wind | 3 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 694 | 534.71 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 720 | 535.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 722 | 535.27 | radiation | 40 | 1440 | > th | dose dependent | rect. | 12 | 3 |
| 747 | 535.48 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 10 |
| 750 | 535.50 | humidity | 50 | 4320 | > th | dose independent | rect. | 16 | 8 |
| 762 | 535.75 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 765 | 535.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 13 |
| 767 | 536.04 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 778 | 536.50 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 10 |
| 797 | 536.67 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 15 |
| 798 | 536.68 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 804 | 536.93 | wind | 3 | 43200 | > th | dose dependent | rect. | 2 | 13 |
| 807 | 537.07 | temperature | 30 | 1440 | > th | dose independent | sin | 10 | NA |
| 833 | 537.40 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 852 | 537.60 | radiation | 40 | 1440 | > th | dose dependent | sin | 13 | NA |
| 861 | 537.80 | wind | 7 | 43200 | > th | dose dependent | rect. | 20 | 18 |
| 886 | 538.06 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 13 |
| 892 | 538.25 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 933 | 538.59 | temperature | 25 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 943 | 538.74 | temperature | 30 | 1440 | < th | dose independent | sin | 10 | NA |
| 986 | 539.52 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 19 |