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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0628600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Thaumatin-like pathogenesis-related protein 3 precursor.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.35 (0.0823) R2 : 0.318
β1 : -1.61 (0.314) R2dD : 0.0511 R2D : 0.0225
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.05 (0.551) R2dE : 0.0218 R2E : 0.0727
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 12.9 (2.37) R2dD*E : 0.172 R2D*E : 0.255
γ1 : 0.28 (0.168) R2dN8 : 0.00586 R2N8 : -0.0106
σ : 1.42
deviance : 935.87
__
_____
C
peak time of C : --
E
wheather : atmosphere
threshold : 999.7
memory length : 12540
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
925.22 1.43 5.35 -1.58 0.442 1.04 0.259 12.8 0.289 16.1 999.8 12541 -- --
981.3 1.46 5.55 -2.03 0.541 3.39 -0.321 -- 0.35 16.9 997 11678 -- --
925.19 1.42 5.35 -1.57 0.444 1.01 -- 13 0.284 16.3 999.8 12541 -- --
973.48 1.45 5.53 -2.19 0.452 3.59 -- -- 0.381 16.8 997.8 11576 -- --
935.87 1.42 5.35 -1.61 -- 1.05 -- 12.9 0.28 -- 999.7 12540 -- --
1296.93 1.69 5.6 -1.48 0.48 -- 0.439 -- 0.055 16.2 -- -- -- --
1297.37 1.69 5.6 -1.47 0.488 -- -- -- 0.0574 16.5 -- -- -- --
982.32 1.46 5.53 -2.32 -- 3.67 -- -- 0.377 -- 998.3 11907 -- --
1094.53 1.54 5.49 -- 0.511 3.18 -- -- 0.57 16.9 997.8 11395 -- --
1310.12 1.69 5.6 -1.49 -- -- -- -- 0.0445 -- -- -- -- --
1354.54 1.72 5.57 -- 0.516 -- -- -- 0.221 16.4 -- -- -- --
1107.21 1.55 5.48 -- -- 3.11 -- -- 0.554 -- 997.7 11410 -- --
1368.82 1.73 5.56 -- -- -- -- -- 0.21 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 901.15 atmosphere 1005 14400 > th dose independent rect. 6 1
3 907.77 atmosphere 1005 14400 < th dose independent rect. 5 2
16 928.41 atmosphere 1000 14400 < th dose dependent rect. 17 2
18 928.77 atmosphere 1000 14400 < th dose dependent rect. 17 4
23 929.36 atmosphere 1000 14400 > th dose independent rect. 21 1
24 929.43 atmosphere 1000 14400 < th dose independent rect. 21 2
35 930.15 atmosphere 1000 14400 > th dose independent rect. 23 1
43 930.59 atmosphere 1000 14400 < th dose dependent rect. 20 1
52 931.56 wind 9 4320 > th dose dependent rect. 19 9
80 933.14 atmosphere 1000 14400 < th dose independent rect. 17 8
93 933.48 atmosphere 1000 14400 > th dose independent rect. 17 8
97 933.53 atmosphere 1000 14400 < th dose independent rect. 17 1
113 933.96 wind 9 4320 > th dose dependent rect. 20 1
126 934.33 atmosphere 995 14400 > th dose independent rect. 15 3
147 934.92 atmosphere 1000 14400 < th dose dependent sin 18 NA
178 935.47 atmosphere 1000 14400 < th dose dependent rect. 8 14
200 935.73 atmosphere 995 14400 > th dose independent rect. 7 11
209 935.83 atmosphere 995 14400 > th dose independent rect. 11 7
229 936.06 atmosphere 1005 14400 < th dose dependent rect. 5 1
231 936.08 atmosphere 995 14400 < th dose independent rect. 15 3
238 936.16 atmosphere 995 14400 < th dose independent rect. 14 5
283 936.35 atmosphere 995 14400 > th dose independent rect. 7 14
286 936.36 atmosphere 1000 14400 < th dose dependent rect. 8 1
301 936.40 atmosphere 1000 14400 > th dose independent rect. 17 1
369 937.18 wind 9 4320 > th dose independent rect. 19 2
386 937.37 wind 9 4320 < th dose independent rect. 19 3
425 937.64 wind 9 4320 > th dose independent rect. 19 9
472 938.06 atmosphere 1000 14400 < th dose dependent rect. 14 22
478 938.09 atmosphere 1000 14400 < th dose dependent rect. 14 19
511 938.31 atmosphere 1000 14400 < th dose dependent rect. 24 22
522 938.37 atmosphere 1000 14400 < th dose dependent rect. 11 22
546 938.49 atmosphere 1000 14400 < th dose dependent no NA NA
596 938.78 atmosphere 1000 14400 < th dose dependent rect. 17 23
600 938.83 atmosphere 1000 14400 < th dose dependent rect. 20 23
628 939.11 atmosphere 1000 14400 < th dose dependent rect. 6 6
668 939.45 atmosphere 1000 14400 < th dose independent sin 15 NA
759 940.25 atmosphere 1000 14400 > th dose independent sin 14 NA
839 941.09 atmosphere 1000 14400 < th dose dependent rect. 11 1
866 941.33 atmosphere 1000 14400 < th dose dependent rect. 24 1