Os12g0626500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Seed maturation protein domain containing protein.
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Os12g0626500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Seed maturation protein domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 397.42 | 0.937 | 3.4 | 0.564 | 0.901 | 0.882 | 2.8 | 3.98 | -0.272 | 6.54 | 67.5 | 5707 | -- | -- |
| 413.72 | 0.947 | 3.42 | 0.337 | 0.893 | 1.46 | 2.75 | -- | -0.267 | 6.45 | 52.86 | 6010 | -- | -- |
| 416.63 | 0.951 | 3.41 | 0.612 | 0.912 | 0.972 | -- | 4.21 | -0.278 | 6.7 | 67.57 | 5917 | -- | -- |
| 433.27 | 0.969 | 3.4 | 0.364 | 0.947 | 1.55 | -- | -- | -0.244 | 6.76 | 53.02 | 5606 | -- | -- |
| 455.61 | 0.994 | 3.44 | 0.758 | -- | 1.2 | -- | 5.03 | -0.288 | -- | 68.43 | 7046 | -- | -- |
| 446.65 | 0.991 | 3.43 | 0.746 | 0.909 | -- | 2.87 | -- | -0.335 | 6.32 | -- | -- | -- | -- |
| 466.83 | 1.01 | 3.43 | 0.782 | 0.923 | -- | -- | -- | -0.343 | 6.52 | -- | -- | -- | -- |
| 477.9 | 1.02 | 3.42 | 0.365 | -- | 1.53 | -- | -- | -0.201 | -- | 53 | 5756 | -- | -- |
| 435.75 | 0.972 | 3.4 | -- | 0.944 | 1.73 | -- | -- | -0.242 | 6.65 | 53 | 5619 | -- | -- |
| 511.14 | 1.06 | 3.45 | 0.805 | -- | -- | -- | -- | -0.324 | -- | -- | -- | -- | -- |
| 482.95 | 1.03 | 3.45 | -- | 0.933 | -- | -- | -- | -0.43 | 6.47 | -- | -- | -- | -- |
| 481.11 | 1.02 | 3.43 | -- | -- | 1.69 | -- | -- | -0.22 | -- | 53 | 5764 | -- | -- |
| 528.23 | 1.07 | 3.47 | -- | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 393.30 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 2 | 393.43 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 3 | 394.95 | wind | 3 | 14400 | < th | dose independent | rect. | 3 | 2 |
| 4 | 395.13 | humidity | 50 | 4320 | < th | dose dependent | rect. | 15 | 19 |
| 5 | 395.16 | humidity | 50 | 4320 | < th | dose dependent | rect. | 15 | 3 |
| 23 | 395.44 | wind | 3 | 14400 | > th | dose independent | rect. | 3 | 2 |
| 49 | 396.65 | radiation | 10 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 53 | 397.15 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 55 | 397.83 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 6 |
| 62 | 399.14 | radiation | 30 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 65 | 399.59 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 86 | 400.05 | wind | 9 | 14400 | < th | dose dependent | rect. | 3 | 4 |
| 87 | 400.10 | radiation | 30 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 107 | 400.49 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 112 | 400.67 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 9 |
| 139 | 401.25 | humidity | 50 | 14400 | < th | dose independent | sin | 14 | NA |
| 157 | 401.34 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 15 |
| 163 | 401.49 | wind | 1 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 169 | 401.70 | wind | 7 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 172 | 401.75 | humidity | 50 | 1440 | < th | dose dependent | sin | 12 | NA |
| 177 | 401.87 | humidity | 70 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 178 | 401.88 | wind | 3 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 179 | 401.89 | radiation | 10 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 189 | 402.35 | humidity | 60 | 14400 | > th | dose independent | rect. | 15 | 20 |
| 195 | 402.48 | humidity | 50 | 14400 | > th | dose independent | sin | 14 | NA |
| 198 | 402.52 | wind | 3 | 90 | < th | dose dependent | rect. | 1 | 21 |
| 228 | 402.89 | radiation | 20 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 229 | 402.95 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 236 | 403.02 | humidity | 50 | 1440 | > th | dose independent | rect. | 14 | 11 |
| 238 | 403.02 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 14 |
| 240 | 403.04 | humidity | 50 | 1440 | > th | dose independent | rect. | 14 | 14 |
| 241 | 403.04 | humidity | 60 | 14400 | < th | dose dependent | rect. | 11 | 21 |
| 261 | 403.12 | humidity | 50 | 1440 | > th | dose independent | rect. | 14 | 6 |
| 276 | 403.19 | humidity | 50 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 285 | 403.28 | humidity | 50 | 1440 | > th | dose independent | rect. | 14 | 19 |
| 293 | 403.35 | radiation | 40 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 299 | 403.42 | humidity | 60 | 14400 | < th | dose dependent | sin | 20 | NA |
| 338 | 403.57 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 359 | 403.63 | humidity | 60 | 14400 | < th | dose dependent | rect. | 13 | 3 |
| 369 | 403.67 | wind | 1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 381 | 403.74 | humidity | 60 | 14400 | < th | dose dependent | rect. | 20 | 22 |
| 431 | 403.79 | radiation | 1 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 433 | 403.80 | humidity | 60 | 14400 | < th | dose dependent | no | NA | NA |
| 516 | 403.82 | radiation | 10 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 520 | 403.82 | wind | 3 | 90 | < th | dose dependent | sin | 5 | NA |
| 572 | 403.97 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 4 |
| 576 | 404.03 | wind | 1 | 90 | < th | dose independent | rect. | 1 | 11 |
| 586 | 404.13 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 590 | 404.17 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 23 |
| 594 | 404.20 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 614 | 404.29 | humidity | 60 | 14400 | > th | dose independent | sin | 10 | NA |
| 619 | 404.31 | humidity | 50 | 1440 | > th | dose independent | sin | 14 | NA |
| 629 | 404.34 | wind | 3 | 90 | < th | dose dependent | rect. | 3 | 13 |
| 638 | 404.38 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 642 | 404.40 | humidity | 60 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 674 | 404.47 | humidity | 60 | 14400 | < th | dose independent | sin | 10 | NA |
| 703 | 404.64 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 763 | 404.94 | humidity | 60 | 14400 | < th | dose independent | rect. | 9 | 3 |
| 764 | 404.95 | wind | 3 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 798 | 405.08 | wind | 1 | 90 | < th | dose dependent | rect. | 4 | 18 |
| 861 | 405.34 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 881 | 405.46 | humidity | 60 | 14400 | > th | dose independent | rect. | 7 | 5 |
| 883 | 405.46 | humidity | 60 | 14400 | > th | dose independent | rect. | 24 | 12 |
| 886 | 405.46 | wind | 3 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 898 | 405.52 | humidity | 60 | 14400 | > th | dose independent | rect. | 2 | 10 |
| 917 | 405.63 | wind | 7 | 4320 | > th | dose independent | rect. | 24 | 1 |
| 920 | 405.64 | wind | 7 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 933 | 405.74 | wind | 1 | 90 | < th | dose independent | rect. | 3 | 9 |
| 963 | 405.87 | wind | 1 | 90 | < th | dose independent | rect. | 1 | 6 |
| 998 | 406.00 | humidity | 60 | 14400 | < th | dose independent | rect. | 21 | 15 |