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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0626000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.07 (0.046) R2 : 0.238
β1 : 0.837 (0.174) R2dD : 0.044 R2D : 0.0878
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.94 (0.216) R2dE : 0.158 R2E : 0.184
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.147 (0.102) R2dN8 : 0.00513 R2N8 : -0.00388
σ : 0.849
deviance : 332.29
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -219.5
memory length : 675
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
315.63 0.835 4.04 1.27 0.96 2.22 0.814 2.62 -0.0662 23.6 10.81 6 -- --
318.99 0.838 4.09 0.9 0.948 2.2 0.147 -- -0.155 23.2 10.81 6 -- --
316.74 0.835 4.06 1.13 0.945 2.16 -- 1.68 -0.0912 23.2 14.5 2 -- --
318.94 0.832 4.09 0.894 0.946 2.18 -- -- -0.156 23.2 13.7 2 -- --
362.36 0.891 4.01 1.31 -- 1.32 -- 1.73 0.0309 -- 8.979 4 -- --
363.35 0.894 4.02 1.3 0.689 -- -0.572 -- 0.152 20.2 -- -- -- --
364.28 0.894 4.02 1.32 0.688 -- -- -- 0.151 20.5 -- -- -- --
332.29 0.849 4.07 0.837 -- 1.94 -- -- -0.147 -- -219.5 675 -- --
338.06 0.856 4.12 -- 1.04 2.61 -- -- -0.307 23.6 13.43 2 -- --
390.69 0.924 4 1.31 -- -- -- -- 0.144 -- -- -- -- --
409.89 0.947 4.05 -- 0.683 -- -- -- 0.0042 20.6 -- -- -- --
348.86 0.87 4.1 -- -- 2.25 -- -- -0.279 -- -219.7 712 -- --
436.11 0.975 4.03 -- -- -- -- -- -0.00169 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 308.72 temperature 15 10 > th dose dependent rect. 3 23
6 311.57 temperature 20 10 > th dose dependent rect. 8 18
7 311.63 temperature 20 10 > th dose dependent rect. 8 16
14 313.14 temperature 25 10 < th dose dependent sin 22 NA
16 313.38 temperature 20 10 > th dose dependent rect. 7 23
38 315.34 temperature 10 10 > th dose dependent sin 19 NA
45 315.76 temperature 20 10 > th dose dependent rect. 1 23
49 315.93 temperature 10 10 > th dose dependent no NA NA
54 316.16 temperature 25 1440 < th dose dependent rect. 17 9
55 316.17 temperature 25 1440 < th dose dependent rect. 21 1
59 316.24 temperature 25 1440 < th dose dependent rect. 20 6
69 316.41 temperature 25 1440 < th dose dependent rect. 1 1
78 316.57 temperature 30 90 < th dose dependent rect. 23 23
106 317.04 temperature 25 1440 < th dose dependent sin 15 NA
118 317.14 temperature 25 1440 < th dose dependent rect. 11 18
157 317.50 temperature 30 270 < th dose dependent rect. 23 21
166 317.58 temperature 10 1440 > th dose dependent rect. 1 1
222 318.25 temperature 10 720 > th dose dependent rect. 3 21
246 318.51 temperature 20 10 > th dose dependent rect. 23 23
261 318.65 temperature 30 10 < th dose dependent rect. 11 23
264 318.69 temperature 20 4320 > th dose independent rect. 20 4
275 318.78 temperature 30 90 < th dose dependent rect. 11 10
293 318.88 temperature 30 10 < th dose dependent rect. 13 23
304 318.96 temperature 30 10 < th dose dependent rect. 17 23
307 319.00 temperature 30 10 < th dose dependent rect. 9 23
314 319.09 temperature 30 10 < th dose dependent rect. 2 18
315 319.10 temperature 30 10 < th dose dependent no NA NA
323 319.17 temperature 10 720 > th dose dependent rect. 7 8
328 319.21 temperature 10 720 > th dose dependent rect. 3 16
330 319.22 temperature 30 10 < th dose dependent rect. 15 23
344 319.36 temperature 10 1440 > th dose dependent rect. 21 5
360 319.43 temperature 25 1440 < th dose dependent rect. 17 19
361 319.43 temperature 25 1440 < th dose dependent rect. 17 21
370 319.47 temperature 10 1440 > th dose dependent rect. 21 8
391 319.54 temperature 20 10 > th dose dependent rect. 21 23
433 319.71 temperature 25 1440 < th dose dependent rect. 13 23
434 319.72 temperature 10 720 > th dose dependent sin 0 NA
473 319.83 temperature 25 10 < th dose dependent rect. 8 12
475 319.85 temperature 25 1440 < th dose dependent no NA NA
506 319.92 temperature 25 1440 < th dose dependent rect. 20 23
523 319.97 temperature 25 1440 < th dose dependent rect. 24 23
532 319.99 temperature 25 1440 < th dose dependent rect. 3 23
544 320.02 temperature 25 720 < th dose dependent rect. 5 16
552 320.04 temperature 20 720 > th dose dependent rect. 3 12
557 320.04 temperature 10 270 > th dose dependent rect. 16 23
580 320.10 temperature 20 90 > th dose dependent rect. 18 23
616 320.22 temperature 20 1440 > th dose dependent rect. 3 1
669 320.39 temperature 25 1440 < th dose dependent rect. 3 1
675 320.41 temperature 30 10 < th dose dependent rect. 21 23
693 320.47 temperature 30 270 < th dose dependent rect. 11 8
697 320.47 temperature 30 10 < th dose dependent rect. 1 23
703 320.48 temperature 30 10 < th dose dependent rect. 23 23
715 320.52 temperature 10 720 > th dose dependent rect. 12 23
747 320.65 temperature 20 4320 < th dose independent rect. 20 5
760 320.67 temperature 30 720 < th dose dependent sin 1 NA
811 320.81 temperature 25 720 < th dose dependent sin 23 NA
861 320.96 atmosphere 1005 14400 < th dose independent rect. 23 1
891 321.07 temperature 30 10 < th dose dependent rect. 19 23
895 321.09 temperature 20 4320 > th dose independent rect. 14 11
953 321.25 wind 5 4320 < th dose independent rect. 20 1
959 321.26 wind 5 4320 > th dose independent rect. 20 1