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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0625200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.62 (0.0286) R2 : 0.312
β1 : -1.5 (0.105) R2dD : 0.32 R2D : 0.309
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.073 (0.0612) R2dN8 : 0.00288 R2N8 : -0.00793
σ : 0.538
deviance : 132.44
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
113.11 0.5 3.59 -1.7 0.365 -0.808 -1.57 -1.01 -0.0224 15.9 4.794 4556 -- --
113.74 0.497 3.61 -1.68 0.354 -0.673 -1.63 -- -0.0397 16 4.741 4610 -- --
120.13 0.51 3.58 -1.73 0.358 -0.855 -- -1.27 -0.0253 15.6 4.742 4562 -- --
121.19 0.513 3.62 -1.7 0.34 -0.677 -- -- -0.0593 15.6 4.773 4549 -- --
125.52 0.522 3.58 -1.82 -- -0.867 -- -0.716 0.00315 -- 4.6 6846 -- --
119.65 0.513 3.61 -1.47 0.312 -- -1.64 -- -0.0557 15.9 -- -- -- --
127.36 0.528 3.62 -1.49 0.302 -- -- -- -0.065 15.5 -- -- -- --
126 0.523 3.6 -1.81 -- -0.785 -- -- -0.000355 -- 4.697 6846 -- --
175.31 0.617 3.64 -- 0.382 0.998 -- -- -0.0776 16.2 2 12533 -- --
132.44 0.538 3.62 -1.5 -- -- -- -- -0.073 -- -- -- -- --
185.64 0.637 3.58 -- 0.331 -- -- -- 0.101 15.5 -- -- -- --
153.47 0.577 3.53 -- -- 1.1 -- -- 0.327 -- 5.555 47520 -- --
191.78 0.646 3.58 -- -- -- -- -- 0.0934 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 108.93 wind 5.0 4320 > th dose independent rect. 13 7
2 109.02 atmosphere 995.0 43200 < th dose dependent rect. 13 13
4 109.13 wind 5.0 4320 < th dose independent rect. 13 7
11 109.37 wind 7.0 4320 < th dose independent rect. 14 2
13 109.38 wind 5.0 4320 > th dose dependent rect. 14 2
17 109.49 wind 5.0 4320 > th dose independent rect. 13 2
27 109.60 atmosphere 995.0 43200 < th dose dependent rect. 12 17
37 109.70 atmosphere 995.0 43200 < th dose dependent sin 16 NA
45 109.86 atmosphere 995.0 43200 < th dose dependent rect. 14 10
63 110.03 wind 3.0 4320 > th dose dependent rect. 13 6
78 110.25 atmosphere 995.0 43200 < th dose independent rect. 16 21
83 110.28 atmosphere 995.0 43200 > th dose independent rect. 17 20
97 110.32 humidity 50.0 14400 > th dose dependent rect. 2 7
100 110.37 atmosphere 995.0 43200 < th dose independent rect. 17 19
109 110.47 atmosphere 995.0 43200 > th dose independent rect. 21 19
121 110.54 humidity 50.0 30 > th dose dependent rect. 12 23
134 110.60 humidity 50.0 14400 > th dose dependent rect. 6 2
149 110.64 atmosphere 995.0 43200 < th dose independent rect. 9 23
168 110.69 wind 7.0 43200 > th dose dependent rect. 18 2
171 110.70 atmosphere 995.0 43200 < th dose independent rect. 21 20
216 110.84 atmosphere 995.0 43200 < th dose independent no NA NA
228 110.86 radiation 1.0 1440 < th dose independent rect. 9 2
232 110.86 radiation 1.0 1440 < th dose dependent rect. 9 2
235 110.87 wind 7.0 43200 > th dose independent rect. 16 3
237 110.88 atmosphere 995.0 43200 > th dose independent no NA NA
240 110.88 atmosphere 995.0 43200 > th dose independent rect. 8 23
251 110.90 atmosphere 995.0 43200 > th dose independent rect. 10 23
254 110.91 wind 7.0 43200 < th dose independent rect. 16 3
257 110.91 atmosphere 995.0 43200 > th dose independent rect. 13 23
302 111.07 radiation 1.0 1440 > th dose independent rect. 9 1
305 111.07 humidity 90.0 14400 < th dose dependent rect. 7 1
306 111.07 wind 9.0 4320 < th dose dependent rect. 13 6
323 111.12 temperature 30.0 270 < th dose dependent rect. 8 5
329 111.13 atmosphere 995.0 43200 > th dose independent rect. 3 23
331 111.13 humidity 50.0 270 > th dose dependent rect. 12 20
332 111.14 atmosphere 995.0 43200 > th dose independent rect. 1 23
363 111.25 atmosphere 995.0 43200 < th dose independent rect. 1 23
372 111.26 wind 9.0 4320 < th dose dependent rect. 13 3
378 111.27 wind 7.0 43200 > th dose dependent rect. 16 3
388 111.30 wind 3.0 4320 > th dose dependent rect. 17 2
389 111.30 humidity 90.0 14400 > th dose dependent rect. 12 3
412 111.37 radiation 1.0 1440 > th dose independent rect. 9 4
417 111.37 humidity 50.0 10 > th dose dependent rect. 14 21
424 111.40 atmosphere 995.0 43200 > th dose independent sin 7 NA
428 111.40 radiation 40.0 720 < th dose dependent rect. 15 9
435 111.43 humidity 50.0 270 > th dose dependent rect. 13 18
437 111.44 humidity 90.0 270 < th dose independent rect. 21 4
456 111.48 wind 5.0 4320 > th dose independent sin 19 NA
463 111.50 wind 5.0 4320 < th dose independent sin 19 NA
480 111.54 humidity 90.0 270 < th dose independent rect. 22 1
544 111.64 radiation 10.0 720 < th dose dependent rect. 14 10
571 111.70 radiation 1.0 1440 > th dose independent rect. 12 1
572 111.70 humidity 90.0 90 < th dose independent rect. 21 6
575 111.71 wind 5.0 43200 < th dose independent rect. 13 1
577 111.71 humidity 60.0 30 > th dose independent rect. 12 23
587 111.72 humidity 50.0 14400 > th dose dependent rect. 20 13
591 111.73 radiation 10.0 720 < th dose dependent rect. 13 4
595 111.74 radiation 1.0 720 < th dose independent rect. 11 13
604 111.75 wind 1.0 1440 < th dose independent rect. 6 1
609 111.76 atmosphere 995.0 43200 < th dose independent sin 7 NA
620 111.77 humidity 90.0 14400 < th dose dependent rect. 23 10
664 111.84 wind 7.0 43200 > th dose dependent rect. 16 1
666 111.85 precipitation 0.1 14400 > th dose independent rect. 1 1
669 111.85 precipitation 0.1 14400 > th dose dependent rect. 1 1
670 111.85 wind 9.0 4320 < th dose dependent rect. 17 2
675 111.86 humidity 80.0 14400 > th dose independent rect. 20 16
676 111.86 humidity 80.0 14400 < th dose independent rect. 20 16
677 111.86 humidity 90.0 14400 < th dose dependent rect. 20 13
679 111.87 radiation 10.0 720 < th dose dependent rect. 15 2
732 111.97 wind 5.0 43200 > th dose independent rect. 13 1
735 111.97 atmosphere 995.0 43200 < th dose independent rect. 12 13
743 111.99 precipitation 0.1 14400 > th dose independent rect. 23 3
748 111.99 precipitation 0.1 14400 > th dose dependent rect. 23 3
756 112.00 radiation 40.0 1440 < th dose dependent rect. 22 7
760 112.01 humidity 90.0 4320 < th dose independent rect. 6 2
781 112.04 radiation 1.0 1440 < th dose independent rect. 13 1
783 112.04 radiation 1.0 1440 < th dose dependent rect. 13 1
790 112.05 humidity 90.0 14400 > th dose independent rect. 11 4
798 112.06 precipitation 0.1 14400 < th dose independent rect. 1 1
800 112.06 precipitation 0.1 14400 < th dose dependent rect. 1 1
810 112.07 humidity 90.0 14400 < th dose dependent rect. 2 7
813 112.08 wind 1.0 1440 > th dose independent rect. 6 1
820 112.09 precipitation 0.1 14400 < th dose independent rect. 23 3
826 112.09 precipitation 0.1 14400 < th dose dependent rect. 23 3
832 112.10 humidity 90.0 10 < th dose independent rect. 22 5
852 112.12 atmosphere 995.0 43200 < th dose dependent sin 10 NA
888 112.16 atmosphere 1000.0 270 > th dose independent rect. 21 15
912 112.19 temperature 15.0 30 > th dose independent rect. 11 16
935 112.23 wind 1.0 30 > th dose independent rect. 11 16
949 112.25 temperature 25.0 720 > th dose dependent rect. 21 1
952 112.26 humidity 80.0 14400 > th dose independent sin 8 NA
953 112.26 humidity 90.0 4320 > th dose independent rect. 6 2
967 112.27 atmosphere 1015.0 270 < th dose dependent rect. 1 7
998 112.30 atmosphere 995.0 43200 < th dose independent rect. 21 15