Os12g0624400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0624400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.39 | 0.454 | 3.43 | -0.329 | 0.106 | 0.415 | 0.234 | 1.39 | -0.237 | 6.25 | 22.21 | 1961 | -- | -- |
| 97.82 | 0.461 | 3.39 | 0.117 | 0.101 | 0.395 | 0.447 | -- | -0.123 | 6.69 | 22.3 | 1923 | -- | -- |
| 93.45 | 0.45 | 3.44 | -0.332 | 0.112 | 0.418 | -- | 1.41 | -0.238 | 5.07 | 22.3 | 1961 | -- | -- |
| 98.08 | 0.461 | 3.39 | 0.131 | 0.11 | 0.394 | -- | -- | -0.125 | 5.09 | 22.4 | 1961 | -- | -- |
| 94.11 | 0.452 | 3.44 | -0.328 | -- | 0.42 | -- | 1.41 | -0.235 | -- | 22.26 | 1963 | -- | -- |
| 103.75 | 0.478 | 3.42 | -0.0261 | 0.107 | -- | 0.436 | -- | -0.261 | 7.16 | -- | -- | -- | -- |
| 104.13 | 0.478 | 3.42 | -0.019 | 0.12 | -- | -- | -- | -0.263 | 5.67 | -- | -- | -- | -- |
| 98.73 | 0.463 | 3.39 | 0.148 | -- | 0.407 | -- | -- | -0.118 | -- | 22.29 | 1962 | -- | -- |
| 98.51 | 0.462 | 3.39 | -- | 0.115 | 0.366 | -- | -- | -0.143 | 5.05 | 22.3 | 1944 | -- | -- |
| 104.87 | 0.479 | 3.42 | -0.0151 | -- | -- | -- | -- | -0.26 | -- | -- | -- | -- | -- |
| 104.14 | 0.477 | 3.42 | -- | 0.12 | -- | -- | -- | -0.261 | 5.68 | -- | -- | -- | -- |
| 99.22 | 0.464 | 3.39 | -- | -- | 0.366 | -- | -- | -0.145 | -- | 22.39 | 1945 | -- | -- |
| 104.88 | 0.478 | 3.42 | -- | -- | -- | -- | -- | -0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.52 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 2 | 94.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 3 | 94.56 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 12 |
| 4 | 94.62 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 18 |
| 6 | 94.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 10 | 94.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 13 |
| 17 | 94.72 | temperature | 25 | 1440 | < th | dose dependent | rect. | 15 | 7 |
| 32 | 94.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 34 | 94.84 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 41 | 94.86 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 98 | 95.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 1 |
| 115 | 95.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 9 |
| 121 | 95.11 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 135 | 95.14 | temperature | 25 | 270 | < th | dose dependent | sin | 5 | NA |
| 148 | 95.16 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 177 | 95.22 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 195 | 95.26 | wind | 1 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 206 | 95.29 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 23 |
| 235 | 95.35 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 241 | 95.36 | wind | 3 | 14400 | < th | dose dependent | rect. | 21 | 3 |
| 248 | 95.36 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 261 | 95.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 265 | 95.39 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 2 |
| 280 | 95.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 282 | 95.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 283 | 95.42 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 299 | 95.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 1 |
| 300 | 95.45 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 2 |
| 324 | 95.49 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 351 | 95.54 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 379 | 95.59 | temperature | 10 | 720 | > th | dose dependent | sin | 9 | NA |
| 496 | 95.75 | wind | 1 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 501 | 95.76 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 502 | 95.76 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 563 | 95.82 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 21 |
| 566 | 95.83 | wind | 3 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 603 | 95.87 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 626 | 95.89 | wind | 3 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 634 | 95.89 | wind | 3 | 14400 | < th | dose dependent | rect. | 10 | 21 |
| 653 | 95.91 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 4 |
| 688 | 95.94 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 700 | 95.95 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 19 |
| 727 | 95.96 | wind | 3 | 14400 | < th | dose dependent | rect. | 2 | 22 |
| 747 | 95.98 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 749 | 95.98 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 782 | 96.01 | wind | 3 | 14400 | < th | dose dependent | rect. | 5 | 10 |
| 812 | 96.03 | wind | 3 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 819 | 96.03 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 8 |
| 838 | 96.04 | wind | 3 | 14400 | < th | dose independent | rect. | 19 | 22 |
| 839 | 96.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 2 |
| 867 | 96.05 | wind | 3 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 875 | 96.07 | wind | 3 | 14400 | < th | dose dependent | no | NA | NA |
| 877 | 96.07 | temperature | 15 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 894 | 96.08 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 9 |
| 899 | 96.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 17 |
| 910 | 96.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 7 |