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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0624200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/calcium exchanger membrane region domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.33 (0.0543) R2 : 0.78
β1 : 7.55 (0.204) R2dD : 0.728 R2D : 0.511
β2 : 1.79 (0.137) R2dC : 0.0841 R2C : 0.058
β3 : -2.08 (0.251) R2dE : 0.0358 R2E : -0.066
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.59 (0.116) R2dN8 : 0.123 R2N8 : 0.0134
σ : 1.01
deviance : 473.07
__
_____
C
peak time of C : 8.37
E
wheather : atmosphere
threshold : 1012
memory length : 6520
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
467.29 1.02 5.36 7.33 1.8 -2.04 1.08 -1.51 1.54 8.32 1012 6071 -- --
469.74 1.01 5.34 7.52 1.81 -2.09 1.04 -- 1.58 8.35 1012 6105 -- --
470.9 1.01 5.36 7.38 1.79 -2.06 -- -1.42 1.55 8.38 1012 6088 -- --
473.07 1.01 5.33 7.55 1.79 -2.08 -- -- 1.59 8.37 1012 6520 -- --
649.39 1.19 5.4 7.43 -- -1.97 -- -1.33 1.57 -- 1011 6270 -- --
539.97 1.09 5.31 7.13 1.79 -- 1.15 -- 1.69 8.33 -- -- -- --
544.09 1.09 5.31 7.16 1.78 -- -- -- 1.69 8.4 -- -- -- --
643.15 1.18 5.4 7.55 -- -1.95 -- -- 1.61 -- 1011 10816 -- --
1868.55 2.01 5.5 -- 1.83 -2.37 -- -- 0.859 8.14 993.1 3550 -- --
721.46 1.26 5.36 7.17 -- -- -- -- 1.71 -- -- -- -- --
1896.18 2.04 5.49 -- 1.82 -- -- -- 0.892 8.11 -- -- -- --
1126.01 1.56 5.81 -- -- -4.33 -- -- -0.276 -- 994.8 47520 -- --
2078.39 2.13 5.54 -- -- -- -- -- 0.913 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 444.21 wind 5.0 14400 < th dose independent rect. 14 1
2 444.65 wind 5.0 14400 > th dose independent rect. 14 1
3 447.43 wind 3.0 14400 > th dose dependent rect. 14 1
4 447.63 humidity 80.0 14400 > th dose independent rect. 15 1
9 453.71 wind 5.0 43200 > th dose independent rect. 23 1
11 454.70 wind 5.0 43200 < th dose independent rect. 23 1
16 456.25 wind 9.0 14400 < th dose dependent rect. 14 1
21 457.23 humidity 80.0 14400 < th dose independent rect. 15 1
27 459.13 precipitation 0.1 43200 < th dose independent rect. 15 1
28 459.13 precipitation 0.1 43200 < th dose dependent rect. 15 1
29 459.25 precipitation 0.1 43200 > th dose independent rect. 15 1
31 459.25 precipitation 0.1 43200 > th dose dependent rect. 15 1
33 460.49 precipitation 0.1 43200 < th dose independent rect. 14 3
34 460.49 precipitation 0.1 43200 < th dose dependent rect. 14 3
35 460.69 precipitation 0.1 43200 > th dose independent rect. 14 3
36 461.18 radiation 20.0 14400 > th dose independent rect. 7 1
37 461.42 wind 9.0 43200 > th dose independent rect. 18 1
42 462.08 wind 9.0 43200 < th dose independent rect. 18 2
44 462.29 humidity 70.0 14400 > th dose dependent rect. 14 1
45 462.29 precipitation 0.1 43200 > th dose dependent rect. 14 3
84 463.03 wind 9.0 43200 > th dose dependent rect. 18 1
86 463.12 atmosphere 1005.0 14400 > th dose independent rect. 14 1
90 463.52 atmosphere 1005.0 14400 > th dose independent rect. 3 15
91 463.55 humidity 90.0 14400 > th dose independent rect. 6 1
107 464.19 atmosphere 1005.0 14400 > th dose independent rect. 23 19
112 464.31 atmosphere 1005.0 14400 < th dose independent rect. 3 15
127 464.71 atmosphere 1005.0 14400 < th dose independent rect. 24 18
131 464.82 radiation 10.0 14400 < th dose independent rect. 13 1
148 465.36 humidity 80.0 14400 > th dose independent rect. 10 6
149 465.37 atmosphere 1005.0 14400 < th dose independent rect. 14 1
166 465.45 radiation 20.0 4320 < th dose independent rect. 22 12
168 465.46 atmosphere 1005.0 14400 < th dose independent rect. 14 3
170 465.47 radiation 20.0 4320 < th dose independent rect. 19 15
181 465.55 radiation 20.0 4320 < th dose independent rect. 3 7
187 465.59 atmosphere 1005.0 14400 < th dose independent rect. 4 1
190 465.61 precipitation 0.1 43200 < th dose independent rect. 12 5
191 465.61 precipitation 0.1 43200 < th dose dependent rect. 12 5
192 465.62 wind 1.0 43200 < th dose independent rect. 5 1
197 465.66 precipitation 0.1 43200 > th dose independent rect. 12 5
201 465.73 atmosphere 1005.0 14400 > th dose independent rect. 16 1
207 465.79 atmosphere 1005.0 14400 < th dose independent rect. 16 1
213 465.85 atmosphere 995.0 14400 > th dose dependent rect. 13 1
220 465.98 atmosphere 995.0 14400 > th dose dependent rect. 15 1
222 466.04 atmosphere 1015.0 14400 < th dose dependent rect. 15 1
228 466.12 atmosphere 995.0 14400 > th dose dependent rect. 13 3
243 466.22 humidity 80.0 14400 < th dose independent rect. 10 6
249 466.29 atmosphere 1015.0 14400 < th dose dependent rect. 13 1
251 466.33 atmosphere 1005.0 14400 > th dose independent sin 1 NA
256 466.36 atmosphere 1015.0 14400 < th dose dependent rect. 13 3
282 466.59 radiation 10.0 4320 > th dose dependent rect. 17 17
292 466.68 humidity 90.0 14400 < th dose independent rect. 6 1
302 466.74 radiation 10.0 4320 > th dose dependent rect. 5 5
328 466.88 atmosphere 1005.0 14400 > th dose independent rect. 12 20
344 467.03 atmosphere 1005.0 14400 > th dose independent rect. 4 1
355 467.09 atmosphere 1005.0 14400 > th dose independent rect. 3 3
383 467.24 wind 3.0 43200 < th dose dependent rect. 24 5
398 467.32 atmosphere 995.0 14400 > th dose dependent rect. 19 1
408 467.37 atmosphere 995.0 14400 > th dose dependent rect. 13 11
412 467.41 atmosphere 1005.0 14400 < th dose independent sin 1 NA
435 467.51 atmosphere 995.0 14400 > th dose dependent rect. 23 1
456 467.60 wind 9.0 43200 > th dose independent rect. 16 1
461 467.61 radiation 40.0 4320 < th dose dependent rect. 7 3
468 467.64 wind 9.0 43200 > th dose independent rect. 16 4
480 467.67 atmosphere 1015.0 14400 < th dose dependent rect. 19 1
481 467.67 atmosphere 1015.0 14400 < th dose dependent rect. 13 11
512 467.77 atmosphere 995.0 14400 > th dose dependent rect. 17 1
528 467.80 atmosphere 995.0 14400 > th dose dependent sin 18 NA
547 467.84 atmosphere 1015.0 14400 < th dose dependent rect. 23 1
572 467.91 atmosphere 1015.0 14400 < th dose dependent rect. 17 1
603 467.98 atmosphere 1005.0 14400 > th dose independent no NA NA
627 468.03 atmosphere 995.0 14400 > th dose dependent rect. 19 5
647 468.08 atmosphere 1015.0 14400 < th dose dependent sin 18 NA
659 468.10 atmosphere 1010.0 14400 < th dose dependent rect. 3 1
708 468.19 atmosphere 1005.0 14400 > th dose independent rect. 16 23
714 468.20 wind 1.0 43200 < th dose independent rect. 2 4
752 468.28 radiation 20.0 4320 < th dose independent sin 9 NA
857 468.46 atmosphere 1015.0 14400 < th dose dependent rect. 19 5
882 468.51 temperature 20.0 4320 > th dose independent rect. 21 1
905 468.54 temperature 20.0 4320 < th dose independent rect. 20 2
992 468.69 precipitation 0.1 43200 > th dose dependent rect. 12 5