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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0623700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.89 (0.0151) R2 : 0.0163
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0872 (0.0317) R2dN8 : 0.0211 R2N8 : 0.0163
σ : 0.284
deviance : 36.94
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.66 0.277 2.88 0.0644 0.125 0.105 0.198 1.61 0.103 11.7 0.7034 27 -- --
35.25 0.277 2.88 0.042 0.125 0.31 0.16 -- 0.104 11.9 0.8 26 -- --
34.81 0.275 2.88 0.0718 0.125 0.0948 -- 1.53 0.103 11.1 0.7399 26 -- --
35.34 0.277 2.88 0.0402 0.13 0.295 -- -- 0.104 11.5 0.7986 26 -- --
35.79 0.279 2.88 0.0692 -- 0.0805 -- 1.48 0.102 -- 0.7468 26 -- --
35.92 0.281 2.88 0.0608 0.12 -- 0.103 -- 0.0945 10.7 -- -- -- --
35.96 0.281 2.88 0.0646 0.12 -- -- -- 0.0946 10.5 -- -- -- --
36.27 0.28 2.89 0.0434 -- 0.277 -- -- 0.102 -- 0.773 31 -- --
35.37 0.277 2.88 -- 0.13 0.319 -- -- 0.103 11.5 0.7002 31 -- --
36.84 0.284 2.89 0.0626 -- -- -- -- 0.0942 -- -- -- -- --
36.07 0.281 2.89 -- 0.119 -- -- -- 0.0874 10.5 -- -- -- --
36.32 0.281 2.89 -- -- 0.286 -- -- 0.0981 -- 0.7127 31 -- --
36.94 0.284 2.89 -- -- -- -- -- 0.0872 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.25 wind 1.0 90 < th dose independent rect. 12 1
2 32.25 wind 1.0 90 < th dose dependent rect. 12 2
5 32.26 wind 1.0 10 < th dose independent rect. 14 4
10 32.26 wind 1.0 10 < th dose dependent rect. 14 4
14 32.27 wind 1.0 10 < th dose independent rect. 13 1
19 32.27 wind 1.0 10 < th dose dependent rect. 13 1
107 32.47 wind 1.0 30 < th dose independent rect. 10 5
109 32.52 wind 1.0 30 < th dose dependent rect. 10 4
235 32.91 wind 1.0 30 < th dose dependent sin 22 NA
258 33.05 wind 1.0 30 < th dose independent sin 22 NA
272 33.08 wind 1.0 30 < th dose independent rect. 10 1
273 33.08 temperature 10.0 1440 > th dose independent rect. 11 1
277 33.08 atmosphere 995.0 1440 > th dose independent rect. 11 1
280 33.08 precipitation 0.1 1440 < th dose independent rect. 11 1
283 33.08 temperature 10.0 1440 > th dose independent rect. 12 23
286 33.08 wind 1.0 30 < th dose dependent rect. 10 1
287 33.08 precipitation 0.1 1440 < th dose dependent rect. 11 1
289 33.09 wind 1.0 30 < th dose independent rect. 6 9
315 33.14 radiation 40.0 30 < th dose independent rect. 10 1
323 33.16 radiation 20.0 30 > th dose independent rect. 10 1
329 33.16 atmosphere 1000.0 30 > th dose dependent rect. 10 1
331 33.17 temperature 30.0 30 < th dose independent rect. 10 1
332 33.17 atmosphere 1005.0 30 > th dose independent rect. 10 1
357 33.19 temperature 15.0 30 > th dose dependent rect. 10 1
363 33.20 humidity 60.0 30 > th dose independent rect. 10 1
364 33.20 humidity 70.0 30 < th dose independent rect. 10 1
365 33.20 atmosphere 1010.0 30 < th dose independent rect. 10 1
375 33.21 temperature 10.0 30 > th dose independent rect. 10 1
378 33.21 humidity 90.0 30 < th dose independent rect. 10 1
381 33.21 radiation 1.0 30 > th dose independent rect. 10 1
383 33.21 precipitation 0.1 30 < th dose independent rect. 10 1
385 33.21 temperature 10.0 30 > th dose independent rect. 11 23
386 33.21 precipitation 0.1 30 < th dose dependent rect. 10 1
388 33.22 wind 1.0 30 > th dose independent rect. 10 1
394 33.23 radiation 40.0 30 < th dose dependent rect. 10 1
403 33.24 humidity 80.0 30 < th dose dependent rect. 10 1
407 33.25 humidity 50.0 30 > th dose dependent rect. 10 1
417 33.28 radiation 1.0 30 > th dose dependent rect. 10 1
421 33.33 wind 9.0 30 < th dose independent rect. 11 23
429 33.38 atmosphere 1015.0 30 < th dose dependent rect. 10 1
441 33.46 radiation 1.0 1440 > th dose independent rect. 11 1
445 33.49 wind 1.0 30 > th dose independent sin 21 NA
449 33.49 wind 1.0 30 > th dose dependent rect. 10 1
682 34.36 humidity 90.0 1440 < th dose independent rect. 11 1
690 34.39 precipitation 0.1 30 < th dose independent rect. 11 23
692 34.39 precipitation 0.1 30 < th dose dependent rect. 11 23
695 34.41 wind 1.0 720 > th dose independent rect. 11 8
701 34.44 atmosphere 995.0 30 > th dose independent rect. 11 23
747 34.59 wind 9.0 720 < th dose independent rect. 23 8
748 34.59 temperature 10.0 720 > th dose independent rect. 23 8
749 34.59 temperature 30.0 720 < th dose independent rect. 23 8
750 34.59 humidity 50.0 720 > th dose independent rect. 23 8
752 34.59 atmosphere 995.0 720 > th dose independent rect. 23 8
753 34.59 radiation 30.0 720 < th dose independent rect. 23 8
757 34.59 temperature 10.0 720 > th dose independent rect. 7 16
759 34.60 temperature 10.0 720 > th dose independent rect. 11 8
760 34.60 atmosphere 1015.0 720 < th dose independent rect. 11 8
763 34.60 wind 9.0 720 < th dose independent rect. 19 16
764 34.60 temperature 10.0 720 > th dose independent rect. 19 16
765 34.60 atmosphere 995.0 720 > th dose independent rect. 19 16
821 34.67 wind 1.0 90 > th dose independent rect. 7 12
849 34.71 radiation 40.0 720 < th dose dependent rect. 23 8
860 34.74 precipitation 0.1 720 > th dose independent rect. 8 1
863 34.74 radiation 40.0 30 < th dose independent rect. 10 14
864 34.74 precipitation 0.1 720 > th dose dependent rect. 8 1
867 34.74 wind 1.0 30 < th dose dependent rect. 2 14
885 34.76 atmosphere 1015.0 30 < th dose independent rect. 11 23
914 34.79 humidity 50.0 720 > th dose independent rect. 19 16
926 34.80 wind 1.0 30 < th dose independent rect. 2 16
934 34.80 wind 1.0 30 < th dose dependent rect. 24 18
939 34.81 wind 1.0 30 < th dose independent rect. 2 14
946 34.81 wind 1.0 30 < th dose dependent rect. 24 15
980 34.83 wind 1.0 30 > th dose independent rect. 11 23