Os12g0623500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cationic amino acid transporter-like protein.
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Os12g0623500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cationic amino acid transporter-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.34 | 0.35 | 13.1 | 0.549 | 0.648 | 0.706 | -0.377 | 0.882 | 0.735 | 19.9 | 17.85 | 9 | -- | -- |
| 57.81 | 0.357 | 13.1 | 0.552 | 0.72 | 0.573 | 0.554 | -- | 0.727 | 20.9 | 17.85 | 9 | -- | -- |
| 55.61 | 0.347 | 13.1 | 0.553 | 0.656 | 0.706 | -- | 0.73 | 0.731 | 19.9 | 18.03 | 8 | -- | -- |
| 58.43 | 0.356 | 13.1 | 0.529 | 0.638 | 0.716 | -- | -- | 0.73 | 19.9 | 17.82 | 8 | -- | -- |
| 71.83 | 0.397 | 13.1 | 0.536 | -- | 0.932 | -- | 0.639 | 0.728 | -- | 13.3 | 4 | -- | -- |
| 64.79 | 0.377 | 13.2 | 0.541 | 1.21 | -- | 0.796 | -- | 0.724 | 22.2 | -- | -- | -- | -- |
| 67.27 | 0.384 | 13.2 | 0.511 | 1.2 | -- | -- | -- | 0.722 | 22.1 | -- | -- | -- | -- |
| 73.96 | 0.401 | 13.1 | 0.51 | -- | 0.938 | -- | -- | 0.726 | -- | 12.77 | 2 | -- | -- |
| 65.78 | 0.378 | 13.2 | -- | 0.653 | 0.694 | -- | -- | 0.677 | 20.1 | 17.74 | 8 | -- | -- |
| 154.97 | 0.582 | 13.1 | 0.527 | -- | -- | -- | -- | 0.724 | -- | -- | -- | -- | -- |
| 74.15 | 0.403 | 13.2 | -- | 1.21 | -- | -- | -- | 0.666 | 22.1 | -- | -- | -- | -- |
| 80.68 | 0.418 | 13.1 | -- | -- | 0.926 | -- | -- | 0.674 | -- | 10.54 | 2 | -- | -- |
| 162.29 | 0.595 | 13.1 | -- | -- | -- | -- | -- | 0.666 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 49.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 9 |
| 4 | 49.93 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 7 | 50.23 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 10 | 50.45 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 19 | 50.79 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 24 | 50.86 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 27 | 50.88 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 11 |
| 66 | 51.48 | temperature | 25 | 10 | > th | dose dependent | rect. | 20 | 20 |
| 90 | 51.77 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 24 | 17 |
| 101 | 51.84 | atmosphere | 1000 | 30 | > th | dose independent | rect. | 2 | 17 |
| 102 | 51.85 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 138 | 52.12 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 16 |
| 165 | 52.33 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 10 | 9 |
| 205 | 52.60 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 10 | 9 |
| 376 | 53.66 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 9 |
| 406 | 53.82 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 24 | 17 |
| 423 | 53.88 | atmosphere | 1000 | 10 | > th | dose independent | sin | 22 | NA |
| 450 | 53.98 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 2 | 17 |
| 454 | 53.99 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 457 | 54.00 | temperature | 10 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 470 | 54.04 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 17 |
| 475 | 54.06 | temperature | 20 | 10 | > th | dose independent | rect. | 14 | 16 |
| 486 | 54.08 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 16 |
| 497 | 54.12 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 504 | 54.15 | radiation | 20 | 270 | < th | dose dependent | rect. | 23 | 16 |
| 532 | 54.26 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 15 |
| 592 | 54.43 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 24 | 23 |
| 598 | 54.44 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 24 | 23 |
| 602 | 54.44 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 17 |
| 603 | 54.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 17 |
| 703 | 54.74 | radiation | 40 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 744 | 54.85 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 7 |
| 754 | 54.90 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 778 | 54.92 | atmosphere | 1000 | 10 | < th | dose independent | sin | 22 | NA |
| 787 | 54.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 793 | 54.95 | atmosphere | 1005 | 10 | < th | dose dependent | sin | 22 | NA |
| 816 | 54.99 | radiation | 1 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 826 | 55.01 | radiation | 40 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 836 | 55.04 | radiation | 40 | 90 | < th | dose dependent | sin | 5 | NA |
| 846 | 55.05 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 877 | 55.08 | radiation | 1 | 90 | > th | dose dependent | sin | 4 | NA |
| 900 | 55.13 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 8 | 15 |
| 913 | 55.15 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 8 |
| 928 | 55.18 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 929 | 55.19 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 935 | 55.19 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 9 | 13 |
| 938 | 55.20 | temperature | 30 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 943 | 55.20 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 962 | 55.22 | humidity | 70 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 971 | 55.24 | wind | 9 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 987 | 55.27 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 15 |
| 992 | 55.27 | radiation | 1 | 90 | > th | dose dependent | rect. | 17 | 21 |