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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0621500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to IRE.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0248) R2 : 0.0217
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.166 (0.0522) R2dN8 : 0.028 R2N8 : 0.0217
σ : 0.467
deviance : 99.92
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
93.2 0.454 3.33 0.04 0.102 -0.451 0.367 1.55 0.168 19.1 1.2 15 -- --
95.5 0.455 3.31 0.12 0.0862 -0.345 0.433 -- 0.184 18.8 1.173 14 -- --
93.33 0.45 3.33 0.0271 0.105 -0.466 -- 1.67 0.168 18.7 1.133 16 -- --
96.03 0.456 3.31 0.109 0.0853 -0.341 -- -- 0.189 19 1.138 14 -- --
93.83 0.451 3.33 0.0406 -- -0.457 -- 1.71 0.165 -- 1.097 16 -- --
98.82 0.466 3.31 0.158 0.0146 -- -0.435 -- 0.181 6.13 -- -- -- --
99 0.466 3.31 0.151 0.0689 -- -- -- 0.182 0.848 -- -- -- --
96.15 0.459 3.31 0.118 -- -0.295 -- -- 0.186 -- 1.097 16 -- --
96.33 0.457 3.31 -- 0.0871 -0.355 -- -- 0.177 18.9 1.103 14 -- --
99.3 0.466 3.31 0.154 -- -- -- -- 0.183 -- -- -- -- --
99.6 0.467 3.31 -- 0.0714 -- -- -- 0.165 0.943 -- -- -- --
96.52 0.459 3.31 -- -- -0.305 -- -- 0.173 -- 1.097 16 -- --
99.92 0.467 3.31 -- -- -- -- -- 0.166 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 79.21 atmosphere 995.0 30 > th dose independent rect. 3 23
3 79.79 atmosphere 1015.0 30 < th dose dependent rect. 2 1
4 79.81 wind 3.0 30 < th dose independent rect. 2 1
5 79.81 wind 3.0 30 < th dose dependent rect. 2 1
10 79.84 atmosphere 1005.0 30 > th dose dependent rect. 2 1
14 79.87 temperature 10.0 30 > th dose independent rect. 2 1
16 79.87 temperature 25.0 30 < th dose independent rect. 2 1
18 79.87 humidity 50.0 30 > th dose independent rect. 2 1
21 79.87 atmosphere 995.0 30 > th dose independent rect. 2 1
22 79.87 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 79.87 radiation 1.0 30 < th dose independent rect. 2 1
29 79.87 precipitation 0.1 30 < th dose independent rect. 2 1
30 79.87 temperature 10.0 30 > th dose independent rect. 3 23
31 79.87 temperature 10.0 30 > th dose dependent rect. 2 1
32 79.87 radiation 1.0 30 < th dose dependent rect. 2 1
37 79.87 precipitation 0.1 30 < th dose dependent rect. 2 1
39 79.88 humidity 50.0 30 > th dose dependent rect. 2 1
45 79.90 temperature 30.0 30 < th dose dependent rect. 2 1
55 79.97 atmosphere 1005.0 30 > th dose independent rect. 2 1
68 80.15 wind 1.0 30 > th dose independent rect. 2 1
108 80.67 wind 9.0 30 < th dose independent rect. 3 23
112 81.29 precipitation 0.1 30 < th dose independent rect. 3 23
113 81.29 precipitation 0.1 30 < th dose dependent rect. 3 23
126 82.78 radiation 1.0 4320 < th dose dependent rect. 3 1
127 82.78 radiation 10.0 43200 < th dose dependent rect. 3 1
131 82.80 wind 9.0 1440 < th dose independent rect. 3 1
132 82.80 temperature 10.0 1440 > th dose independent rect. 3 1
135 82.80 temperature 30.0 1440 < th dose independent rect. 3 1
139 82.80 humidity 50.0 1440 > th dose independent rect. 3 1
148 82.80 atmosphere 995.0 1440 > th dose independent rect. 3 1
149 82.80 radiation 1.0 1440 < th dose independent rect. 3 1
169 82.80 temperature 10.0 1440 > th dose independent rect. 4 23
201 84.81 humidity 50.0 30 > th dose independent rect. 3 23
239 86.67 humidity 90.0 90 < th dose independent rect. 2 1
269 88.51 atmosphere 1015.0 30 < th dose independent rect. 3 23
330 90.18 wind 1.0 10 > th dose independent rect. 8 23
333 90.28 temperature 30.0 30 < th dose independent rect. 3 23
342 90.46 wind 1.0 10 < th dose independent rect. 14 13
345 90.49 wind 1.0 10 < th dose independent rect. 17 10
351 90.51 atmosphere 995.0 30 > th dose dependent rect. 3 23
352 90.53 wind 1.0 10 < th dose independent rect. 12 15
374 90.91 wind 1.0 30 > th dose dependent rect. 2 1
378 91.00 wind 9.0 30 < th dose dependent rect. 3 23
383 91.05 radiation 10.0 30 < th dose dependent rect. 3 23
392 91.23 wind 1.0 10 < th dose independent rect. 7 20
394 91.27 atmosphere 1015.0 1440 < th dose independent rect. 3 1
444 91.71 humidity 50.0 30 > th dose dependent rect. 3 23
445 91.72 radiation 10.0 30 > th dose independent rect. 7 1
472 91.93 humidity 80.0 10 < th dose independent rect. 6 2
511 92.14 wind 1.0 10 > th dose independent sin 16 NA
519 92.16 atmosphere 995.0 720 > th dose independent rect. 23 16
542 92.30 radiation 10.0 30 < th dose independent rect. 3 23
548 92.36 humidity 90.0 90 < th dose independent rect. 1 7
551 92.38 humidity 80.0 10 < th dose independent rect. 2 6
555 92.40 wind 1.0 30 > th dose independent rect. 3 23
611 92.75 wind 3.0 30 < th dose dependent rect. 2 6
624 92.88 wind 1.0 10 > th dose independent rect. 21 10
648 93.07 atmosphere 995.0 720 > th dose independent rect. 8 7
661 93.16 atmosphere 1000.0 30 > th dose independent rect. 8 18
701 93.23 humidity 80.0 30 > th dose independent rect. 3 23
705 93.26 radiation 20.0 720 > th dose independent rect. 15 1
715 93.29 atmosphere 995.0 720 > th dose independent rect. 15 8
721 93.33 precipitation 0.1 720 < th dose independent rect. 15 8
725 93.33 precipitation 0.1 720 < th dose dependent rect. 15 8
731 93.36 radiation 20.0 720 > th dose independent rect. 15 16
750 93.39 temperature 10.0 720 > th dose independent rect. 15 8
751 93.39 temperature 10.0 720 > th dose independent rect. 23 16
802 93.53 atmosphere 1000.0 10 > th dose independent rect. 10 16
803 93.53 atmosphere 995.0 720 > th dose independent rect. 11 16
813 93.61 wind 9.0 720 < th dose independent rect. 15 17
819 93.62 radiation 20.0 30 < th dose dependent rect. 14 12
837 93.68 humidity 70.0 10 > th dose independent rect. 17 9
841 93.69 atmosphere 1000.0 30 > th dose independent rect. 17 9
860 93.76 radiation 10.0 10 < th dose dependent rect. 11 15
866 93.78 humidity 50.0 720 > th dose independent rect. 3 8
885 93.85 wind 9.0 4320 < th dose independent rect. 3 6
891 93.85 radiation 1.0 10 < th dose dependent rect. 16 10
903 93.88 radiation 40.0 720 < th dose independent rect. 15 8
948 93.89 temperature 10.0 720 > th dose independent rect. 3 8
949 93.89 atmosphere 995.0 720 > th dose independent rect. 3 8
950 93.89 temperature 10.0 720 > th dose independent rect. 11 16
967 93.90 temperature 25.0 10 < th dose independent rect. 2 7
968 93.90 wind 9.0 720 < th dose independent rect. 15 8
974 93.92 humidity 70.0 30 > th dose independent rect. 14 12
981 93.93 wind 3.0 30 < th dose dependent rect. 2 11
990 93.95 humidity 90.0 90 < th dose independent rect. 1 20