Os12g0619000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : IQ calmodulin-binding region domain containing protein.
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Os12g0619000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : IQ calmodulin-binding region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 156.18 | 0.587 | 7.49 | -3.56 | 1.31 | 2.65 | -0.0171 | -2.4 | -0.789 | 5.21 | 25.01 | 1232 | -- | -- |
| 158.25 | 0.586 | 7.42 | -2.95 | 1.3 | 2.43 | -0.0317 | -- | -0.651 | 5.28 | 24.9 | 1210 | -- | -- |
| 156.11 | 0.582 | 7.49 | -3.57 | 1.31 | 2.66 | -- | -2.45 | -0.784 | 5.25 | 25.07 | 1221 | -- | -- |
| 158.13 | 0.586 | 7.42 | -2.95 | 1.32 | 2.42 | -- | -- | -0.632 | 5.21 | 25.09 | 1219 | -- | -- |
| 242.6 | 0.725 | 7.54 | -3.6 | -- | 2.89 | -- | -2.31 | -0.864 | -- | 24.46 | 1248 | -- | -- |
| 364.17 | 0.895 | 7.36 | -2.19 | 1.58 | -- | 0.388 | -- | -0.359 | 4.26 | -- | -- | -- | -- |
| 364.59 | 0.894 | 7.36 | -2.19 | 1.58 | -- | -- | -- | -0.362 | 4.27 | -- | -- | -- | -- |
| 244.71 | 0.729 | 7.45 | -2.98 | -- | 2.65 | -- | -- | -0.692 | -- | 24.47 | 1247 | -- | -- |
| 363.52 | 0.888 | 7.27 | -- | 1.4 | 1.75 | -- | -- | 0.0242 | 5.06 | 27.8 | 1172 | -- | -- |
| 499.82 | 1.04 | 7.37 | -2.13 | -- | -- | -- | -- | -0.32 | -- | -- | -- | -- | -- |
| 491.18 | 1.04 | 7.3 | -- | 1.54 | -- | -- | -- | -0.117 | 4.29 | -- | -- | -- | -- |
| 459.87 | 0.999 | 7.29 | -- | -- | 1.83 | -- | -- | 0.0342 | -- | 27.59 | 1237 | -- | -- |
| 619.31 | 1.16 | 7.31 | -- | -- | -- | -- | -- | -0.0834 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 162.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 6 | 162.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 14 |
| 20 | 163.18 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 29 | 163.50 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 21 |
| 31 | 163.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 94 | 164.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 110 | 165.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 22 | 21 |
| 192 | 165.37 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 233 | 166.47 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 270 | 167.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 354 | 174.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 7 |
| 379 | 175.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 538 | 178.75 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 572 | 179.31 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 618 | 180.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 18 |
| 620 | 180.06 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 630 | 180.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 631 | 180.13 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 13 |
| 650 | 180.46 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 653 | 180.62 | temperature | 30 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 668 | 180.82 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 700 | 181.05 | temperature | 30 | 1440 | < th | dose independent | sin | 21 | NA |
| 735 | 181.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 755 | 181.18 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 769 | 181.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 21 |
| 770 | 181.20 | temperature | 30 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 786 | 181.21 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 793 | 181.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 23 |
| 795 | 181.21 | temperature | 30 | 1440 | < th | dose independent | rect. | 21 | 23 |
| 845 | 181.29 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 18 |