Os12g0618800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF266, plant family protein.
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Os12g0618800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF266, plant family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 91.38 | 0.449 | 11.9 | 1.2 | 1.72 | 3.33 | -0.237 | 0.185 | 0.474 | 20.5 | 1.85 | 694 | -- | -- |
| 91.24 | 0.445 | 11.8 | 1.21 | 1.7 | 3.34 | -0.27 | -- | 0.483 | 20.4 | 1.808 | 685 | -- | -- |
| 91.34 | 0.445 | 11.8 | 1.2 | 1.7 | 3.32 | -- | 0.322 | 0.473 | 20.4 | 1.826 | 685 | -- | -- |
| 90.99 | 0.444 | 11.9 | 1.22 | 1.73 | 3.45 | -- | -- | 0.48 | 19.9 | 1.891 | 658 | -- | -- |
| 98.38 | 0.462 | 11.8 | 1.15 | -- | 1.78 | -- | -0.0665 | 0.384 | -- | 0.78 | 383 | -- | -- |
| 113.19 | 0.499 | 11.8 | 0.987 | 1.98 | -- | 0.206 | -- | 0.33 | 2.96 | -- | -- | -- | -- |
| 113.33 | 0.499 | 11.8 | 0.983 | 1.99 | -- | -- | -- | 0.329 | 2.95 | -- | -- | -- | -- |
| 98.26 | 0.462 | 11.8 | 1.11 | -- | 1.79 | -- | -- | 0.393 | -- | 1.672 | 389 | -- | -- |
| 126.76 | 0.524 | 11.9 | -- | 1.08 | 2.59 | -- | -- | 0.351 | 20.7 | 2.558 | 608 | -- | -- |
| 340.05 | 0.862 | 11.8 | 1.07 | -- | -- | -- | -- | 0.38 | -- | -- | -- | -- | -- |
| 138.79 | 0.551 | 11.9 | -- | 2 | -- | -- | -- | 0.219 | 2.96 | -- | -- | -- | -- |
| 130.36 | 0.532 | 11.8 | -- | -- | 1.82 | -- | -- | 0.277 | -- | 2.35 | 401 | -- | -- |
| 370.1 | 0.898 | 11.9 | -- | -- | -- | -- | -- | 0.262 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.85 | temperature | 25 | 90 | > th | dose independent | rect. | 16 | 11 |
| 3 | 83.12 | temperature | 25 | 270 | < th | dose independent | rect. | 12 | 16 |
| 4 | 83.16 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 18 |
| 14 | 84.20 | temperature | 25 | 270 | > th | dose independent | rect. | 14 | 10 |
| 23 | 84.67 | temperature | 25 | 90 | > th | dose independent | sin | 14 | NA |
| 24 | 84.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 12 | 17 |
| 25 | 84.75 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 26 | 84.96 | temperature | 30 | 30 | < th | dose dependent | rect. | 12 | 19 |
| 32 | 85.09 | temperature | 20 | 90 | > th | dose dependent | rect. | 16 | 11 |
| 55 | 85.95 | temperature | 25 | 90 | < th | dose independent | sin | 15 | NA |
| 73 | 86.63 | temperature | 20 | 30 | > th | dose dependent | sin | 13 | NA |
| 85 | 86.81 | temperature | 25 | 720 | > th | dose dependent | rect. | 13 | 4 |
| 134 | 87.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 14 |
| 177 | 88.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 14 |
| 197 | 88.65 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 198 | 88.66 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 209 | 88.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 19 |
| 215 | 88.93 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 21 |
| 218 | 88.97 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 10 |
| 247 | 89.28 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 14 |
| 254 | 89.33 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 255 | 89.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 256 | 89.34 | temperature | 25 | 720 | > th | dose dependent | rect. | 11 | 14 |
| 257 | 89.34 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 22 |
| 268 | 89.39 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 296 | 89.63 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 297 | 89.64 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 309 | 89.68 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 7 |
| 333 | 89.84 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 10 |
| 346 | 89.91 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 352 | 89.95 | radiation | 1 | 720 | > th | dose independent | rect. | 9 | 23 |
| 377 | 90.11 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 19 |
| 381 | 90.14 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 16 |
| 389 | 90.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 6 |
| 412 | 90.35 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 13 |
| 416 | 90.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 435 | 90.49 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 14 |
| 448 | 90.59 | temperature | 25 | 720 | > th | dose dependent | sin | 18 | NA |
| 477 | 90.71 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 7 |
| 481 | 90.72 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 485 | 90.73 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 487 | 90.74 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 7 |
| 490 | 90.75 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 10 |
| 494 | 90.76 | radiation | 1 | 720 | < th | dose independent | rect. | 21 | 23 |
| 495 | 90.77 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 5 |
| 511 | 90.87 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 512 | 90.87 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 5 |
| 639 | 91.40 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 688 | 91.57 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 23 |
| 703 | 91.59 | temperature | 30 | 90 | < th | dose dependent | sin | 15 | NA |
| 706 | 91.60 | temperature | 30 | 10 | < th | dose dependent | sin | 15 | NA |
| 724 | 91.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 747 | 91.79 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 17 |
| 752 | 91.80 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 764 | 91.86 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 23 |
| 820 | 92.12 | radiation | 1 | 720 | < th | dose independent | rect. | 23 | 21 |
| 822 | 92.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 16 |
| 823 | 92.12 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 825 | 92.13 | radiation | 1 | 720 | > th | dose independent | sin | 22 | NA |
| 853 | 92.20 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 893 | 92.31 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 903 | 92.34 | radiation | 1 | 720 | < th | dose independent | sin | 21 | NA |
| 949 | 92.47 | temperature | 25 | 720 | > th | dose independent | rect. | 11 | 7 |
| 951 | 92.47 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 14 |
| 975 | 92.51 | radiation | 1 | 720 | < th | dose independent | rect. | 3 | 17 |
| 987 | 92.55 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 991 | 92.56 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |