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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0618000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0148) R2 : 0.00662
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0543 (0.0312) R2dN8 : 0.00854 R2N8 : 0.00662
σ : 0.279
deviance : 35.64
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.42 0.276 2.9 -0.0496 0.0454 -0.244 -0.0673 0.451 0.0507 14.3 1.019 15 -- --
34.58 0.274 2.9 -0.0339 0.0422 -0.215 -0.0247 -- 0.0554 14.2 1.028 16 -- --
34.4 0.273 2.9 -0.0533 0.0476 -0.252 -- 0.459 0.0502 15 1.054 16 -- --
34.58 0.274 2.9 -0.0347 0.0434 -0.217 -- -- 0.0552 14.6 1.027 16 -- --
34.51 0.274 2.9 -0.051 -- -0.224 -- 0.435 0.0492 -- 1.038 16 -- --
35.57 0.28 2.9 -0.00492 0.0256 -- -0.11 -- 0.0531 8.22 -- -- -- --
35.6 0.279 2.9 -0.00846 0.0274 -- -- -- 0.0529 7.18 -- -- -- --
34.67 0.274 2.9 -0.0336 -- -0.194 -- -- 0.0541 -- 1.021 16 -- --
34.61 0.274 2.89 -- 0.0428 -0.212 -- -- 0.059 14.6 1.038 16 -- --
35.64 0.279 2.9 -0.00795 -- -- -- -- 0.0534 -- -- -- -- --
35.6 0.279 2.9 -- 0.0273 -- -- -- 0.0539 7.2 -- -- -- --
34.7 0.274 2.9 -- -- -0.19 -- -- 0.0577 -- 1 16 -- --
35.64 0.279 2.9 -- -- -- -- -- 0.0543 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.81 humidity 50.0 30 > th dose independent rect. 3 23
2 32.84 wind 1.0 30 < th dose independent rect. 2 1
3 32.84 wind 3.0 30 < th dose dependent rect. 2 1
5 32.84 temperature 20.0 30 > th dose dependent rect. 2 1
6 32.84 atmosphere 1005.0 30 > th dose dependent rect. 2 1
11 32.85 temperature 10.0 30 > th dose independent rect. 2 1
15 32.85 temperature 25.0 30 < th dose independent rect. 2 1
17 32.85 humidity 50.0 30 > th dose independent rect. 2 1
21 32.85 atmosphere 995.0 30 > th dose independent rect. 2 1
22 32.85 atmosphere 1010.0 30 < th dose independent rect. 2 1
24 32.85 radiation 1.0 30 < th dose independent rect. 2 1
29 32.85 precipitation 0.1 30 < th dose independent rect. 2 1
30 32.85 temperature 10.0 30 > th dose independent rect. 3 23
34 32.85 temperature 10.0 30 > th dose dependent rect. 2 1
36 32.85 humidity 50.0 30 > th dose dependent rect. 2 1
39 32.85 radiation 1.0 30 < th dose dependent rect. 2 1
44 32.85 precipitation 0.1 30 < th dose dependent rect. 2 1
46 32.86 atmosphere 1005.0 30 > th dose independent rect. 2 1
48 32.86 atmosphere 995.0 30 > th dose dependent rect. 2 1
50 32.86 atmosphere 1015.0 30 < th dose dependent rect. 2 1
52 32.88 temperature 30.0 30 < th dose dependent rect. 2 1
57 32.92 wind 9.0 30 < th dose independent rect. 3 23
60 32.93 wind 1.0 30 > th dose independent rect. 2 1
113 33.20 atmosphere 995.0 30 > th dose independent rect. 3 23
115 33.21 precipitation 0.1 30 < th dose independent rect. 3 23
116 33.21 precipitation 0.1 30 < th dose dependent rect. 3 23
123 33.32 temperature 25.0 90 > th dose dependent rect. 1 3
130 33.50 wind 9.0 1440 < th dose independent rect. 3 1
131 33.50 temperature 10.0 1440 > th dose independent rect. 3 1
134 33.50 temperature 30.0 1440 < th dose independent rect. 3 1
138 33.50 humidity 50.0 1440 > th dose independent rect. 3 1
147 33.50 atmosphere 995.0 1440 > th dose independent rect. 3 1
148 33.50 radiation 1.0 1440 < th dose independent rect. 3 1
168 33.50 temperature 10.0 1440 > th dose independent rect. 4 23
171 33.50 radiation 1.0 1440 < th dose dependent rect. 3 1
205 33.71 humidity 90.0 90 < th dose independent rect. 2 1
245 33.95 temperature 25.0 10 > th dose dependent rect. 20 1
247 33.96 wind 1.0 30 < th dose independent rect. 24 3
249 33.97 temperature 30.0 30 < th dose independent rect. 3 23
254 33.98 temperature 25.0 10 > th dose independent rect. 20 1
255 33.99 atmosphere 1015.0 30 < th dose independent rect. 3 23
256 34.00 wind 1.0 10 > th dose independent sin 15 NA
270 34.05 radiation 30.0 10 < th dose dependent rect. 14 12
271 34.05 humidity 50.0 30 > th dose dependent rect. 3 23
275 34.06 atmosphere 1015.0 30 < th dose dependent rect. 20 1
276 34.07 wind 3.0 30 > th dose independent rect. 20 1
277 34.07 radiation 10.0 10 < th dose independent rect. 14 12
285 34.09 temperature 10.0 1440 > th dose independent rect. 21 1
288 34.09 temperature 30.0 1440 < th dose independent rect. 21 1
292 34.09 humidity 50.0 1440 > th dose independent rect. 21 1
298 34.09 humidity 90.0 30 < th dose independent rect. 20 1
299 34.09 atmosphere 995.0 1440 > th dose independent rect. 21 1
300 34.09 radiation 1.0 1440 < th dose independent rect. 21 1
321 34.09 temperature 10.0 1440 > th dose independent rect. 22 23
326 34.09 radiation 40.0 1440 < th dose dependent rect. 21 1
329 34.10 humidity 90.0 30 < th dose dependent rect. 20 1
330 34.10 radiation 20.0 1440 < th dose dependent rect. 21 1
332 34.10 radiation 40.0 14400 < th dose dependent rect. 21 1
334 34.11 wind 5.0 30 < th dose independent rect. 20 1
338 34.11 wind 1.0 30 > th dose dependent rect. 20 1
348 34.12 temperature 10.0 30 > th dose independent rect. 20 1
350 34.12 temperature 30.0 30 < th dose independent rect. 20 1
351 34.12 humidity 50.0 30 > th dose independent rect. 20 1
354 34.12 atmosphere 995.0 30 > th dose independent rect. 20 1
355 34.12 atmosphere 1010.0 30 < th dose independent rect. 20 1
357 34.12 radiation 1.0 30 < th dose independent rect. 20 1
362 34.12 precipitation 0.1 30 < th dose independent rect. 20 1
365 34.12 humidity 60.0 90 > th dose independent rect. 15 10
366 34.12 temperature 10.0 30 > th dose independent rect. 21 23
368 34.12 radiation 1.0 30 < th dose dependent rect. 20 1
375 34.12 precipitation 0.1 30 < th dose dependent rect. 20 1
382 34.14 wind 9.0 30 < th dose dependent rect. 20 1
383 34.14 atmosphere 1005.0 30 > th dose dependent rect. 20 1
389 34.15 humidity 50.0 30 > th dose dependent rect. 20 1
401 34.16 radiation 30.0 10 < th dose independent rect. 14 12
411 34.17 wind 9.0 30 < th dose independent rect. 21 23
415 34.17 radiation 30.0 30 < th dose dependent rect. 3 23
417 34.18 atmosphere 1005.0 30 > th dose independent rect. 20 1
419 34.18 temperature 30.0 10 < th dose independent rect. 16 10
426 34.19 wind 1.0 10 > th dose independent rect. 21 23
460 34.23 radiation 20.0 10 < th dose dependent rect. 6 20
466 34.24 radiation 10.0 10 < th dose independent rect. 10 16
475 34.26 wind 1.0 10 > th dose independent rect. 21 13
501 34.29 radiation 10.0 10 < th dose independent rect. 6 20
511 34.31 wind 1.0 10 < th dose independent sin 15 NA
515 34.31 radiation 20.0 30 < th dose independent rect. 3 23
521 34.31 radiation 20.0 10 < th dose dependent rect. 10 16
548 34.34 temperature 30.0 30 < th dose dependent rect. 20 1
557 34.35 radiation 20.0 10 < th dose dependent rect. 8 18
610 34.38 wind 1.0 10 > th dose independent rect. 3 23
658 34.42 wind 9.0 1440 < th dose independent rect. 21 1
682 34.43 atmosphere 1000.0 10 > th dose independent rect. 16 10
700 34.44 humidity 60.0 270 > th dose independent rect. 3 14
712 34.44 humidity 50.0 10 > th dose dependent rect. 5 21
722 34.45 radiation 1.0 10 < th dose dependent rect. 2 5
723 34.45 radiation 1.0 10 < th dose dependent rect. 2 12
789 34.47 humidity 60.0 90 > th dose independent rect. 12 13
805 34.48 wind 1.0 10 > th dose independent rect. 11 23
820 34.49 wind 9.0 10 < th dose independent rect. 2 14
833 34.50 wind 1.0 10 > th dose independent no NA NA
834 34.50 atmosphere 1015.0 1440 < th dose independent rect. 3 1
841 34.50 wind 1.0 30 > th dose dependent rect. 2 1
856 34.51 wind 1.0 10 > th dose independent rect. 16 18
859 34.51 wind 1.0 10 > th dose independent rect. 15 23
866 34.52 humidity 70.0 4320 > th dose independent rect. 22 5
879 34.52 humidity 50.0 30 > th dose dependent rect. 15 11
915 34.54 precipitation 0.1 10 < th dose independent rect. 2 14
917 34.54 atmosphere 1000.0 10 > th dose independent rect. 5 21
923 34.54 precipitation 0.1 10 < th dose dependent rect. 2 14
927 34.55 radiation 1.0 10 < th dose independent rect. 2 4
929 34.55 temperature 10.0 10 > th dose independent rect. 16 10
933 34.55 precipitation 0.1 10 < th dose independent rect. 16 10
935 34.55 radiation 1.0 10 < th dose independent rect. 2 12
939 34.55 temperature 10.0 10 > th dose independent rect. 2 14
941 34.55 atmosphere 1015.0 10 < th dose independent rect. 2 14
949 34.55 precipitation 0.1 10 < th dose dependent rect. 16 10
951 34.56 temperature 25.0 10 < th dose independent rect. 2 3
952 34.56 humidity 90.0 10 > th dose independent rect. 2 3
957 34.56 wind 1.0 10 > th dose independent rect. 21 10
958 34.56 wind 9.0 10 < th dose independent rect. 16 10
972 34.57 precipitation 0.1 10 < th dose independent rect. 2 3
978 34.57 atmosphere 995.0 10 > th dose independent rect. 2 14
982 34.57 precipitation 0.1 10 < th dose dependent rect. 2 3
991 34.58 temperature 10.0 10 > th dose independent rect. 2 3
994 34.58 humidity 50.0 10 > th dose independent rect. 2 3
998 34.58 atmosphere 995.0 10 > th dose independent rect. 2 3
999 34.58 atmosphere 1010.0 10 < th dose independent rect. 2 3