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Os12g0616500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Sodium/hydrogen exchanger family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.09 (0.0423) R2 : 0.8
β1 : 1.64 (0.182) R2dD : 0.0619 R2D : 0.0658
β2 : 3.16 (0.109) R2dC : 0.479 R2C : 0.648
β3 : 3.43 (0.326) R2dE : 0.117 R2E : 0.161
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 5.63 (1.04) R2dD*E : 0.0487 R2D*E : -0.00166
γ1 : -0.0217 (0.0907) R2dN8 : 6.24e-05 R2N8 : -0.00809
σ : 0.744
deviance : 255.3
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C
peak time of C : 22.9
E
wheather : radiation
threshold : 0.3587
memory length : 1525
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
252.82 0.747 7.08 1.67 3.73 3.34 1.92 6.17 -0.013 23.2 0.3736 1438 -- --
272.36 0.769 7.07 2.21 3.46 2.12 1.77 -- -0.0408 23.2 0.46 1491 -- --
255.3 0.744 7.09 1.64 3.16 3.43 -- 5.63 -0.0217 22.9 0.3587 1525 -- --
284.91 0.786 7.07 2.15 3.27 2.28 -- -- -0.0331 23 0.43 1532 -- --
442.13 0.985 6.95 1.87 -- 2.55 -- 0.859 -0.116 -- 1.079 1641 -- --
318.71 0.837 7.05 1.82 3.69 -- 1.67 -- -0.192 23.2 -- -- -- --
330.65 0.852 7.05 1.75 3.68 -- -- -- -0.198 23.2 -- -- -- --
420.36 0.955 6.92 2.08 -- 3.04 -- -- 0.216 -- 2.18 51 -- --
392.79 0.923 7.07 -- 3.4 1.35 -- -- -0.244 23 1.435 1559 -- --
1178.2 1.6 6.96 1.84 -- -- -- -- -0.166 -- -- -- -- --
411.48 0.949 7.1 -- 3.7 -- -- -- -0.393 23.2 -- -- -- --
481.34 1.02 7 -- -- 2.78 -- -- -0.218 -- 1.622 58 -- --
1267.52 1.66 7.01 -- -- -- -- -- -0.37 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 251.40 radiation 1.0 1440 < th dose dependent rect. 17 4
7 251.76 radiation 1.0 1440 < th dose dependent rect. 17 12
12 252.53 radiation 1.0 1440 < th dose dependent sin 14 NA
42 254.34 radiation 1.0 1440 < th dose dependent rect. 7 23
71 255.44 radiation 1.0 1440 < th dose dependent rect. 7 14
88 255.68 radiation 1.0 1440 < th dose dependent rect. 15 21
105 255.87 radiation 1.0 1440 < th dose dependent rect. 3 18
196 256.22 radiation 1.0 1440 < th dose dependent no NA NA
267 258.61 wind 9.0 43200 > th dose independent rect. 19 2
281 259.96 radiation 1.0 14400 < th dose independent rect. 18 3
291 260.67 wind 9.0 43200 < th dose independent rect. 19 2
295 261.36 temperature 20.0 10 > th dose dependent rect. 5 22
297 261.58 wind 9.0 43200 > th dose dependent rect. 19 2
300 261.97 humidity 90.0 43200 < th dose independent rect. 20 2
303 262.39 precipitation 0.1 43200 > th dose independent rect. 19 1
305 262.61 wind 9.0 43200 > th dose dependent rect. 19 4
307 262.72 humidity 90.0 43200 > th dose independent rect. 21 2
308 262.73 temperature 20.0 10 > th dose dependent rect. 17 23
310 262.93 radiation 1.0 14400 < th dose dependent rect. 18 4
319 263.12 radiation 1.0 14400 < th dose dependent rect. 18 10
321 263.16 radiation 1.0 14400 > th dose independent rect. 18 1
331 263.24 precipitation 0.1 43200 < th dose independent rect. 19 1
332 263.24 precipitation 0.1 43200 < th dose dependent rect. 19 1
334 263.29 radiation 10.0 14400 < th dose independent rect. 14 16
339 263.47 radiation 10.0 14400 < th dose independent rect. 16 14
347 263.69 precipitation 0.1 43200 > th dose dependent rect. 14 5
348 263.74 precipitation 0.1 43200 > th dose independent rect. 17 2
350 263.82 radiation 40.0 4320 < th dose dependent rect. 18 3
354 263.89 radiation 1.0 14400 > th dose dependent rect. 18 1
364 263.90 precipitation 0.1 43200 > th dose dependent rect. 10 9
366 263.93 precipitation 0.1 43200 < th dose independent rect. 17 2
367 263.93 precipitation 0.1 43200 < th dose dependent rect. 17 2
371 264.01 radiation 10.0 14400 < th dose independent rect. 16 3
380 264.05 radiation 10.0 14400 < th dose independent rect. 16 11
386 264.08 radiation 10.0 14400 < th dose independent sin 15 NA
388 264.12 radiation 10.0 14400 < th dose independent rect. 13 6
457 264.71 temperature 20.0 10 > th dose dependent no NA NA
461 264.79 precipitation 0.1 43200 > th dose dependent rect. 17 2
466 264.91 precipitation 0.1 43200 > th dose dependent rect. 20 2
475 265.08 temperature 20.0 10 > th dose dependent sin 4 NA
487 265.24 temperature 25.0 1440 > th dose dependent rect. 15 2
488 265.24 wind 9.0 43200 > th dose dependent rect. 19 6
508 265.41 humidity 90.0 43200 < th dose independent rect. 18 18
517 265.49 temperature 20.0 10 > th dose dependent rect. 24 23
526 265.59 humidity 90.0 43200 > th dose dependent rect. 21 2
571 265.93 radiation 40.0 14400 < th dose dependent rect. 18 11
616 266.07 wind 7.0 43200 < th dose dependent rect. 11 1
646 266.25 temperature 20.0 10 > th dose dependent rect. 20 23
652 266.30 humidity 90.0 43200 > th dose independent rect. 18 18
677 266.47 humidity 90.0 43200 > th dose dependent rect. 19 5
686 266.52 precipitation 0.1 43200 < th dose independent rect. 14 4
690 266.52 precipitation 0.1 43200 < th dose dependent rect. 14 4
708 266.60 temperature 30.0 10 < th dose dependent sin 3 NA
713 266.64 radiation 1.0 1440 < th dose independent rect. 7 23
723 266.68 radiation 30.0 14400 < th dose dependent rect. 4 1
748 266.82 radiation 30.0 14400 > th dose dependent rect. 15 17
760 266.89 humidity 90.0 43200 < th dose independent sin 16 NA
776 266.97 wind 5.0 43200 > th dose independent rect. 9 7
794 267.05 wind 1.0 43200 > th dose dependent rect. 11 1
796 267.07 radiation 1.0 1440 < th dose independent sin 14 NA
797 267.07 wind 9.0 43200 > th dose independent rect. 19 6
805 267.12 precipitation 0.1 43200 < th dose independent rect. 11 7
808 267.12 precipitation 0.1 43200 < th dose dependent rect. 11 7
809 267.12 temperature 20.0 90 > th dose dependent rect. 19 23
825 267.19 humidity 90.0 43200 < th dose independent rect. 5 23
826 267.20 humidity 90.0 43200 < th dose independent no NA NA
833 267.22 wind 5.0 43200 < th dose independent rect. 9 7
834 267.22 humidity 90.0 43200 < th dose independent rect. 3 23
837 267.23 precipitation 0.1 43200 > th dose independent rect. 11 7
848 267.25 humidity 90.0 43200 < th dose independent rect. 9 23
862 267.28 temperature 30.0 10 < th dose dependent rect. 3 17
883 267.36 precipitation 0.1 43200 > th dose dependent rect. 14 8
910 267.43 temperature 25.0 1440 > th dose dependent rect. 12 5
925 267.49 radiation 1.0 1440 < th dose independent rect. 16 14
936 267.53 humidity 90.0 43200 < th dose independent rect. 22 23
938 267.53 precipitation 0.1 43200 > th dose dependent rect. 10 12
941 267.54 humidity 90.0 43200 < th dose independent rect. 24 23
943 267.55 wind 5.0 43200 < th dose independent rect. 11 1
959 267.58 atmosphere 1005.0 43200 > th dose independent rect. 16 1
972 267.61 precipitation 0.1 43200 > th dose dependent rect. 17 5