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Os12g0615900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : WD40-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0308) R2 : 0.761
β1 : 1.41 (0.113) R2dD : 0.0853 R2D : 0.0492
β2 : 1.73 (0.0819) R2dC : 0.265 R2C : 0.419
β3 : -1.97 (0.0969) R2dE : 0.247 R2E : 0.401
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.518 (0.066) R2dN8 : 0.0435 R2N8 : -0.00485
σ : 0.577
deviance : 153.24
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C
peak time of C : 15.2
E
wheather : radiation
threshold : 27.93
memory length : 236
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.87
open length of G : 6.48

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
151.57 0.578 11.3 1.38 1.76 -1.98 0.506 -0.612 0.513 15.3 25.85 241 3 6.33
152.16 0.575 11.3 1.39 1.76 -1.95 0.519 -- 0.511 15.3 26.79 236 2.97 6.4
152.23 0.575 11.3 1.39 1.75 -1.97 -- -0.734 0.512 15.3 27.21 234 2.98 6.38
153.24 0.577 11.3 1.41 1.73 -1.97 -- -- 0.518 15.2 27.93 236 2.87 6.48
248.7 0.734 11.3 1.47 -- -2.29 -- -0.471 0.564 -- 58.03 126 2.56 6.51
206.06 0.673 11.4 1.4 2.7 -- 0.836 -- 0.432 17 -- -- -- --
207.85 0.675 11.4 1.4 2.7 -- -- -- 0.436 17 -- -- -- --
229.27 0.705 11.3 1.4 -- -2.31 -- -- 0.536 -- 95.48 296 0.383 6.7
206.08 0.669 11.3 -- 1.72 -1.89 -- -- 0.358 15.2 31.08 228 2.91 6.68
592.38 1.14 11.3 1.31 -- -- -- -- 0.367 -- -- -- -- --
259.82 0.754 11.4 -- 2.68 -- -- -- 0.28 17 -- -- -- --
283.63 0.784 11.3 -- -- -2.32 -- -- 0.483 -- 133.5 297 0.217 6.83
637.34 1.18 11.4 -- -- -- -- -- 0.222 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 153.36 radiation 20.0 270 < th dose dependent rect. 3 6
2 153.52 temperature 10.0 10 > th dose dependent rect. 9 19
7 154.86 wind 5.0 270 < th dose independent rect. 3 4
8 154.93 radiation 20.0 270 < th dose independent rect. 2 7
13 155.35 atmosphere 1000.0 270 > th dose dependent rect. 3 3
15 155.53 temperature 10.0 90 > th dose dependent rect. 8 7
20 156.11 temperature 15.0 10 > th dose dependent rect. 9 6
25 156.61 wind 1.0 270 > th dose independent rect. 3 4
33 156.84 atmosphere 1000.0 10 > th dose dependent rect. 4 5
35 156.91 radiation 30.0 90 < th dose independent rect. 4 5
43 157.23 radiation 10.0 270 < th dose independent rect. 3 4
48 157.28 precipitation 0.1 270 < th dose independent rect. 3 4
49 157.28 precipitation 0.1 270 < th dose dependent rect. 3 4
53 157.38 wind 9.0 270 < th dose independent rect. 7 20
64 157.95 radiation 10.0 270 < th dose dependent rect. 3 10
79 158.36 wind 1.0 270 > th dose independent rect. 2 6
88 158.50 temperature 10.0 270 > th dose independent rect. 3 4
90 158.50 temperature 30.0 270 < th dose independent rect. 3 4
91 158.50 humidity 50.0 270 > th dose independent rect. 3 4
93 158.50 atmosphere 995.0 270 > th dose independent rect. 3 4
94 158.50 atmosphere 1015.0 270 < th dose independent rect. 3 4
96 158.50 temperature 10.0 270 > th dose independent rect. 7 20
120 159.21 radiation 30.0 90 < th dose independent rect. 4 7
125 159.48 atmosphere 1005.0 270 > th dose independent rect. 3 4
126 159.49 precipitation 0.1 270 < th dose independent rect. 7 20
127 159.49 precipitation 0.1 270 < th dose dependent rect. 7 20
147 159.71 wind 9.0 90 < th dose independent rect. 9 19
160 159.99 temperature 15.0 270 > th dose dependent rect. 8 4
171 160.21 atmosphere 1005.0 270 > th dose independent rect. 4 2
213 160.56 radiation 40.0 270 < th dose dependent rect. 3 14
224 160.70 wind 9.0 270 < th dose dependent rect. 3 4
226 160.73 radiation 40.0 90 < th dose independent rect. 4 15
231 160.78 temperature 15.0 270 > th dose dependent rect. 9 1
233 160.82 temperature 30.0 270 < th dose dependent rect. 4 1
241 160.83 temperature 10.0 90 > th dose independent rect. 9 19
291 161.33 temperature 10.0 1440 > th dose independent rect. 5 5
294 161.33 atmosphere 995.0 1440 > th dose independent rect. 5 5
295 161.33 atmosphere 1015.0 1440 < th dose independent rect. 5 5
296 161.33 temperature 10.0 1440 > th dose independent rect. 10 19
301 161.38 wind 9.0 270 < th dose dependent rect. 4 2
302 161.44 precipitation 0.1 90 < th dose independent rect. 9 19
303 161.44 precipitation 0.1 90 < th dose dependent rect. 9 19
342 161.60 temperature 10.0 270 > th dose dependent rect. 22 14
387 162.02 radiation 1.0 270 < th dose independent rect. 4 1
402 162.28 wind 1.0 30 > th dose independent rect. 4 5
404 162.31 radiation 1.0 270 < th dose independent rect. 3 9
406 162.33 temperature 30.0 270 < th dose dependent rect. 3 3
411 162.38 humidity 90.0 10 < th dose independent rect. 3 6
440 162.77 atmosphere 995.0 30 > th dose independent rect. 9 19
442 162.78 atmosphere 995.0 270 > th dose independent rect. 7 20
469 163.26 humidity 70.0 90 > th dose independent rect. 4 7
510 163.71 radiation 1.0 30 > th dose independent rect. 5 4
537 163.83 wind 7.0 270 < th dose independent rect. 7 7
539 163.84 humidity 50.0 270 > th dose dependent rect. 19 8
557 163.90 radiation 30.0 90 < th dose independent rect. 15 18
558 163.92 humidity 50.0 270 > th dose dependent rect. 3 4
559 163.93 humidity 90.0 90 < th dose independent rect. 8 7
602 164.27 radiation 10.0 270 < th dose independent rect. 18 9
604 164.28 temperature 15.0 270 > th dose independent rect. 7 7
617 164.39 radiation 10.0 270 < th dose dependent rect. 18 9
623 164.44 radiation 1.0 270 < th dose independent rect. 3 14
626 164.49 precipitation 0.1 270 < th dose independent rect. 3 15
629 164.49 precipitation 0.1 270 < th dose dependent rect. 3 15
652 164.59 wind 9.0 270 < th dose dependent rect. 7 7
657 164.62 atmosphere 995.0 270 > th dose independent rect. 18 9
658 164.63 temperature 10.0 270 > th dose independent rect. 18 9
659 164.63 humidity 50.0 270 > th dose independent rect. 18 9
663 164.63 temperature 10.0 270 > th dose independent rect. 3 15
664 164.63 atmosphere 1015.0 270 < th dose independent rect. 3 15
667 164.67 radiation 40.0 270 < th dose independent rect. 2 15
668 164.68 humidity 50.0 270 > th dose dependent rect. 4 1
670 164.69 radiation 1.0 270 > th dose independent rect. 7 7
673 164.71 wind 9.0 270 < th dose independent rect. 18 9
683 164.78 temperature 30.0 270 < th dose dependent rect. 2 6
686 164.83 radiation 40.0 10 < th dose independent rect. 5 15
785 165.58 wind 1.0 270 > th dose independent rect. 14 17
793 165.67 humidity 90.0 10 < th dose independent rect. 9 6
798 165.69 temperature 10.0 30 > th dose dependent rect. 4 5
804 165.79 precipitation 0.1 270 < th dose independent rect. 18 9
806 165.79 precipitation 0.1 270 < th dose dependent rect. 18 9
817 165.85 precipitation 0.1 270 < th dose independent rect. 7 7
819 165.85 precipitation 0.1 270 < th dose dependent rect. 7 7
836 165.95 wind 9.0 270 < th dose dependent rect. 7 19
840 165.96 radiation 40.0 90 < th dose dependent rect. 15 18
855 166.03 humidity 90.0 10 < th dose dependent rect. 9 6
881 166.15 temperature 30.0 90 < th dose dependent rect. 4 7
895 166.22 radiation 1.0 270 > th dose dependent rect. 9 1
897 166.23 precipitation 0.1 270 < th dose independent rect. 14 17
899 166.23 precipitation 0.1 270 < th dose dependent rect. 14 17
926 166.38 atmosphere 1015.0 30 < th dose independent rect. 9 19
928 166.39 atmosphere 995.0 270 > th dose independent rect. 7 7
929 166.39 atmosphere 1015.0 270 < th dose independent rect. 7 7
931 166.39 temperature 10.0 270 > th dose independent rect. 14 17
939 166.42 radiation 1.0 270 > th dose dependent rect. 8 3
964 166.49 radiation 40.0 270 < th dose independent rect. 11 21
972 166.55 humidity 50.0 30 > th dose independent rect. 9 19
987 166.63 temperature 10.0 270 > th dose dependent rect. 4 2