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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0615200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.69 (0.0301) R2 : 0.409
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.07 (0.118) R2dE : 0.405 R2E : 0.409
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.044 (0.0639) R2dN8 : 0.000428 R2N8 : 0.00436
σ : 0.565
deviance : 147.41
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : -4.888
memory length : 316
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 16.1
open length of G : 20.6

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
129.11 0.534 3.64 0.789 0.534 -1.88 1.57 2.91 0.131 19.4 4.827 286 16 20.8
136.47 0.544 3.65 0.583 0.539 -1.84 0.878 -- 0.134 19.3 5.199 289 16.1 20.8
134.85 0.541 3.67 0.706 0.593 -1.86 -- 2.19 0.103 19.2 3.755 284 15.9 21
137.4 0.546 3.69 0.495 0.52 -1.79 -- -- 0.0409 19.2 2.151 296 15.8 21.1
143.04 0.557 3.64 0.678 -- -2.08 -- 1.98 0.144 -- -0.04785 317 16.2 20.4
189.11 0.645 3.74 0.187 1.03 -- 0.804 -- -0.141 18.8 -- -- -- --
190.73 0.647 3.73 0.175 1.03 -- -- -- -0.138 18.7 -- -- -- --
143.14 0.557 3.67 0.439 -- -2.1 -- -- 0.0319 -- -3.651 322 16 20.6
141.09 0.553 3.7 -- 0.419 -1.89 -- -- -0.0338 20.7 -2.823 314 15.8 20.8
246.38 0.733 3.71 0.151 -- -- -- -- -0.159 -- -- -- -- --
191.53 0.647 3.74 -- 1.03 -- -- -- -0.158 18.7 -- -- -- --
147.41 0.565 3.69 -- -- -2.07 -- -- -0.044 -- -4.888 316 16.1 20.6
246.98 0.734 3.72 -- -- -- -- -- -0.176 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 132.75 temperature 10.0 270 > th dose dependent rect. 16 21
24 142.24 precipitation 0.1 270 < th dose independent rect. 15 23
25 142.24 precipitation 0.1 270 < th dose dependent rect. 15 23
27 142.41 temperature 15.0 270 > th dose independent rect. 16 21
30 142.90 temperature 15.0 90 > th dose independent rect. 18 19
45 145.09 temperature 10.0 270 > th dose dependent rect. 7 16
48 145.65 temperature 30.0 90 < th dose independent rect. 13 5
65 146.82 radiation 1.0 270 > th dose independent rect. 16 21
77 148.05 humidity 50.0 10 > th dose dependent rect. 14 4
80 148.09 temperature 30.0 10 < th dose dependent rect. 14 4
82 148.26 radiation 10.0 43200 < th dose dependent rect. 19 7
84 148.34 temperature 30.0 10 < th dose dependent rect. 12 6
90 148.82 temperature 15.0 10 > th dose independent rect. 18 20
97 149.32 temperature 10.0 270 > th dose dependent rect. 17 7
107 149.66 temperature 15.0 270 > th dose independent rect. 7 15
108 149.69 humidity 90.0 90 < th dose independent rect. 18 19
148 150.95 temperature 30.0 90 < th dose dependent rect. 15 2
157 151.26 temperature 10.0 10 > th dose dependent rect. 9 16
162 151.42 humidity 50.0 10 > th dose independent rect. 14 4
175 151.62 radiation 40.0 30 < th dose dependent rect. 13 5
177 151.67 humidity 50.0 90 > th dose independent rect. 14 4
193 152.06 radiation 1.0 720 < th dose dependent rect. 5 20
196 152.15 radiation 1.0 720 < th dose independent rect. 5 13
201 152.29 radiation 40.0 90 < th dose independent rect. 13 5
203 152.34 wind 9.0 270 < th dose independent rect. 13 3
214 152.60 wind 9.0 10 < th dose independent rect. 18 20
215 152.62 atmosphere 995.0 270 > th dose independent rect. 13 3
216 152.64 radiation 1.0 720 < th dose dependent rect. 5 13
220 152.70 wind 9.0 90 < th dose independent rect. 18 19
223 152.75 wind 9.0 90 < th dose independent rect. 13 5
241 153.20 humidity 90.0 270 < th dose independent rect. 16 20
242 153.21 temperature 10.0 270 > th dose independent rect. 13 3
244 153.21 atmosphere 1010.0 270 < th dose independent rect. 13 3
250 153.27 radiation 1.0 720 < th dose independent rect. 6 19
263 153.41 wind 1.0 90 > th dose independent rect. 13 5
275 153.54 atmosphere 995.0 10 > th dose independent rect. 14 4
280 153.57 precipitation 0.1 270 < th dose independent rect. 13 3
281 153.57 precipitation 0.1 270 < th dose dependent rect. 13 3
282 153.60 wind 9.0 10 < th dose independent rect. 14 4
297 153.76 wind 9.0 270 < th dose independent rect. 16 21
304 153.80 temperature 10.0 90 > th dose independent rect. 13 5
306 153.80 atmosphere 1010.0 90 < th dose independent rect. 13 5
310 153.81 radiation 1.0 720 < th dose independent rect. 21 21
311 153.81 radiation 30.0 90 < th dose dependent rect. 15 2
314 153.83 atmosphere 995.0 90 > th dose independent rect. 18 19
327 153.93 wind 1.0 270 > th dose independent rect. 13 3
332 154.00 temperature 10.0 10 > th dose independent rect. 14 4
334 154.00 atmosphere 1010.0 10 < th dose independent rect. 14 4
337 154.03 atmosphere 995.0 10 > th dose independent rect. 18 20
350 154.13 humidity 90.0 270 < th dose independent rect. 7 16
357 154.22 precipitation 0.1 270 < th dose independent rect. 7 14
358 154.22 precipitation 0.1 270 < th dose dependent rect. 7 14
361 154.30 precipitation 0.1 10 < th dose independent rect. 14 4
362 154.30 precipitation 0.1 10 < th dose dependent rect. 14 4
363 154.31 radiation 1.0 30 < th dose independent rect. 5 13
368 154.33 radiation 1.0 1440 < th dose dependent rect. 16 22
393 154.56 humidity 90.0 270 < th dose independent rect. 13 3
405 154.70 humidity 50.0 270 > th dose dependent rect. 13 2
407 154.72 atmosphere 995.0 10 > th dose dependent rect. 14 4
408 154.72 radiation 1.0 30 < th dose dependent rect. 5 13
415 154.78 humidity 50.0 14400 > th dose independent rect. 19 7
443 154.91 radiation 1.0 720 < th dose dependent rect. 21 21
456 155.03 wind 9.0 270 < th dose dependent rect. 13 3
482 155.25 radiation 1.0 1440 < th dose dependent rect. 2 17
484 155.27 radiation 40.0 270 < th dose independent rect. 14 1
510 155.35 radiation 1.0 1440 < th dose dependent rect. 5 23
522 155.38 radiation 1.0 1440 < th dose dependent rect. 13 22
559 155.49 humidity 50.0 90 > th dose independent rect. 18 19
560 155.49 radiation 1.0 1440 < th dose dependent no NA NA
580 155.57 temperature 30.0 10 < th dose dependent rect. 1 17
586 155.60 radiation 1.0 1440 < th dose independent rect. 15 23
589 155.63 radiation 20.0 10 < th dose independent rect. 13 5
590 155.63 temperature 15.0 90 > th dose independent rect. 18 7
601 155.67 atmosphere 995.0 270 > th dose independent rect. 16 21
609 155.72 radiation 1.0 1440 < th dose dependent rect. 9 23
646 155.90 radiation 1.0 1440 > th dose independent rect. 15 23
683 156.05 humidity 50.0 10 > th dose dependent rect. 1 17
689 156.07 radiation 1.0 1440 < th dose independent rect. 2 17
769 156.25 radiation 1.0 1440 < th dose independent rect. 5 23
773 156.26 radiation 1.0 1440 < th dose independent rect. 12 23
788 156.30 radiation 1.0 1440 < th dose independent no NA NA
795 156.31 wind 9.0 270 < th dose dependent rect. 12 5
798 156.32 radiation 1.0 1440 < th dose independent rect. 8 23
816 156.39 radiation 1.0 1440 < th dose dependent sin 1 NA
852 156.55 wind 5.0 43200 < th dose independent rect. 17 5
854 156.56 radiation 1.0 1440 > th dose independent rect. 5 14
878 156.59 radiation 1.0 1440 > th dose independent rect. 12 23
882 156.62 radiation 1.0 1440 > th dose independent no NA NA
936 156.66 temperature 10.0 1440 > th dose independent rect. 15 4
940 156.66 wind 5.0 43200 > th dose independent rect. 17 5
948 156.66 temperature 10.0 1440 > th dose independent rect. 19 20
962 156.69 radiation 1.0 1440 > th dose independent rect. 8 23
963 156.70 wind 5.0 43200 > th dose independent rect. 18 3
983 156.76 humidity 90.0 270 < th dose dependent rect. 17 19