Os12g0614900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0614900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.45 | 0.487 | 5.23 | -0.275 | 0.473 | -1.68 | 0.0955 | -0.0793 | 0.466 | 4.48 | 22.77 | 1615 | -- | -- |
| 107.45 | 0.483 | 5.23 | -0.286 | 0.473 | -1.68 | 0.0944 | -- | 0.466 | 4.48 | 22.7 | 1614 | -- | -- |
| 107.47 | 0.483 | 5.23 | -0.272 | 0.474 | -1.69 | -- | -0.0841 | 0.468 | 4.47 | 22.72 | 1615 | -- | -- |
| 107.47 | 0.483 | 5.23 | -0.287 | 0.474 | -1.68 | -- | -- | 0.465 | 4.49 | 22.7 | 1615 | -- | -- |
| 118.33 | 0.507 | 5.23 | -0.256 | -- | -1.67 | -- | -0.0442 | 0.464 | -- | 23.12 | 1367 | -- | -- |
| 136.36 | 0.547 | 5.17 | 0.195 | 0.486 | -- | 0.0219 | -- | 0.729 | 4.53 | -- | -- | -- | -- |
| 136.36 | 0.547 | 5.17 | 0.194 | 0.486 | -- | -- | -- | 0.728 | 4.54 | -- | -- | -- | -- |
| 118.34 | 0.507 | 5.23 | -0.26 | -- | -1.67 | -- | -- | 0.466 | -- | 23.07 | 1367 | -- | -- |
| 109.22 | 0.487 | 5.22 | -- | 0.466 | -1.48 | -- | -- | 0.512 | 4.5 | 22.92 | 1595 | -- | -- |
| 148.98 | 0.57 | 5.17 | 0.213 | -- | -- | -- | -- | 0.741 | -- | -- | -- | -- | -- |
| 137.35 | 0.548 | 5.17 | -- | 0.49 | -- | -- | -- | 0.707 | 4.53 | -- | -- | -- | -- |
| 119.8 | 0.51 | 5.23 | -- | -- | -1.49 | -- | -- | 0.506 | -- | 23.37 | 1353 | -- | -- |
| 150.18 | 0.572 | 5.18 | -- | -- | -- | -- | -- | 0.718 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 108.56 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 3 | 108.87 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 17 |
| 9 | 108.99 | temperature | 25 | 1440 | < th | dose dependent | sin | 18 | NA |
| 17 | 109.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 12 |
| 55 | 109.20 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 21 |
| 83 | 109.28 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 21 |
| 84 | 109.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 112 | 109.33 | temperature | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 120 | 109.35 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 22 |
| 136 | 109.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 141 | 109.40 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 153 | 109.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 22 |
| 157 | 109.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 171 | 109.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 179 | 109.47 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 22 |
| 191 | 109.49 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 205 | 109.50 | temperature | 25 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 209 | 109.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 237 | 109.56 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 255 | 109.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 261 | 109.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 311 | 109.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 453 | 109.97 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 456 | 109.97 | temperature | 25 | 1440 | < th | dose dependent | sin | 1 | NA |
| 470 | 110.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 10 | 22 |
| 493 | 110.05 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 536 | 110.16 | temperature | 25 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 550 | 110.19 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 13 |
| 566 | 110.22 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 13 |
| 583 | 110.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 621 | 110.36 | temperature | 20 | 1440 | < th | dose independent | sin | 4 | NA |
| 628 | 110.37 | temperature | 20 | 1440 | > th | dose independent | sin | 4 | NA |
| 642 | 110.38 | temperature | 20 | 90 | > th | dose independent | rect. | 7 | 23 |
| 643 | 110.38 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 23 |
| 747 | 110.64 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 802 | 110.75 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 810 | 110.77 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 815 | 110.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 17 | 9 |
| 817 | 110.79 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 855 | 110.90 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 891 | 110.96 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 941 | 111.08 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 999 | 111.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |