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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0614600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.23 (0.051) R2 : 0.147
β1 : 1.69 (0.226) R2dD : 0.404 R2D : -0.592
β2 : -- (--) R2dC : -- R2C : --
β3 : 68.3 (8.21) R2dE : 40.4 R2E : -39.1
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 322 (39.5) R2dD*E : 39.1 R2D*E : -40.1
γ1 : 0.104 (0.0685) R2dN8 : 0.00579 R2N8 : -0.25
σ : 0.599
deviance : 165.37
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 7.024
memory length : 88
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 0.982
open length of G : 8.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
163.54 0.601 3.24 1.75 0.171 68.3 0.277 323 0.101 2.83 7.006 89 0.995 8
3289.19 2.67 2.88 2.97 0.302 53.8 -5.41 -- 2.16 14.1 8.975 135 0.964 8.21
163.65 0.596 3.23 1.68 0.174 68.2 -- 322 0.0981 3.33 7.023 88 0.982 8.02
186.59 0.636 2.9 0.068 0.159 2.16 -- -- 0.0908 5.92 9.059 47 1.09 8.92
165.37 0.599 3.23 1.69 -- 68.3 -- 322 0.104 -- 7.024 88 0.982 8.02
191.26 0.648 2.91 0.0823 0.19 -- 0.132 -- 0.0791 4.07 -- -- -- --
191.3 0.648 2.91 0.0808 0.192 -- -- -- 0.0784 4.2 -- -- -- --
187.9 0.638 2.9 0.109 -- 2.33 -- -- 0.0922 -- 8.908 46 0.916 8.93
186.53 0.636 2.91 -- 0.177 2.23 -- -- 0.076 4.41 8.807 41 0.495 8.87
193.29 0.65 2.91 0.0885 -- -- -- -- 0.0835 -- -- -- -- --
191.48 0.647 2.91 -- 0.193 -- -- -- 0.0694 4.2 -- -- -- --
188.21 0.639 2.91 -- -- 2.3 -- -- 0.0801 -- 8.829 44 0.429 8.94
193.5 0.649 2.91 -- -- -- -- -- 0.0737 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 163.59 wind 7.0 90 > th dose dependent rect. 1 8
2 164.39 wind 7.0 90 > th dose independent rect. 1 8
3 165.64 wind 7.0 30 > th dose dependent rect. 19 1
5 165.71 wind 7.0 90 > th dose independent rect. 3 6
6 165.74 wind 7.0 90 > th dose dependent rect. 3 6
9 165.79 wind 7.0 90 > th dose independent rect. 7 2
13 165.80 wind 7.0 90 > th dose dependent rect. 8 1
19 166.38 precipitation 0.1 10 > th dose independent rect. 19 1
29 166.38 precipitation 0.1 10 > th dose dependent rect. 19 1
39 169.15 wind 7.0 30 > th dose independent rect. 19 1
91 171.39 radiation 40.0 90 > th dose dependent rect. 15 18
92 171.48 radiation 40.0 90 > th dose dependent rect. 8 1
178 175.41 wind 3.0 10 > th dose dependent rect. 18 3
192 177.11 precipitation 0.1 10 > th dose independent sin 22 NA
193 177.21 precipitation 0.1 10 > th dose dependent sin 22 NA
207 178.15 precipitation 0.1 10 < th dose independent sin 21 NA
208 178.15 precipitation 0.1 10 < th dose dependent sin 21 NA
209 178.19 wind 5.0 30 > th dose independent rect. 18 16
219 178.51 wind 5.0 30 > th dose dependent rect. 19 15
274 179.66 radiation 20.0 270 > th dose dependent rect. 6 1
294 179.86 temperature 25.0 10 < th dose dependent rect. 8 2
298 179.98 temperature 25.0 90 < th dose independent rect. 18 1
300 180.02 radiation 20.0 270 > th dose independent rect. 6 1
314 180.03 temperature 25.0 10 < th dose independent rect. 20 1
320 180.09 temperature 25.0 10 < th dose independent rect. 18 3
368 180.97 temperature 30.0 30 < th dose dependent rect. 19 2
378 181.09 radiation 1.0 10 > th dose dependent rect. 18 1
419 181.63 temperature 25.0 270 < th dose independent rect. 16 1
420 181.63 temperature 25.0 270 < th dose independent rect. 16 3
424 181.65 humidity 80.0 10 > th dose dependent rect. 20 1
481 182.10 atmosphere 1005.0 90 > th dose independent rect. 19 1
506 182.25 radiation 1.0 270 < th dose independent rect. 15 2
514 182.30 wind 5.0 10 > th dose independent rect. 18 9
517 182.34 humidity 90.0 30 > th dose independent rect. 18 2
534 182.44 humidity 70.0 90 > th dose independent rect. 19 1
538 182.46 radiation 1.0 270 < th dose independent rect. 9 8
560 182.56 temperature 30.0 270 < th dose dependent rect. 16 4
613 182.68 radiation 1.0 270 < th dose independent rect. 8 11
652 182.83 atmosphere 995.0 270 > th dose dependent rect. 16 4
675 182.92 temperature 25.0 270 < th dose dependent rect. 16 1
683 182.96 wind 9.0 10 < th dose independent rect. 21 21
701 183.03 atmosphere 995.0 10 > th dose dependent rect. 18 3
707 183.07 temperature 20.0 10 > th dose independent rect. 18 3
709 183.08 temperature 10.0 1440 > th dose independent rect. 20 2
712 183.08 temperature 30.0 1440 < th dose independent rect. 20 2
716 183.08 humidity 50.0 1440 > th dose independent rect. 20 2
722 183.08 atmosphere 995.0 1440 > th dose independent rect. 20 2
723 183.08 radiation 1.0 1440 < th dose independent rect. 20 2
743 183.08 temperature 10.0 1440 > th dose independent rect. 22 22
746 183.08 radiation 20.0 1440 < th dose dependent rect. 20 2
757 183.11 atmosphere 1000.0 270 > th dose independent rect. 16 4
762 183.13 temperature 10.0 10 > th dose independent rect. 18 3
764 183.13 humidity 50.0 10 > th dose independent rect. 18 3
766 183.13 atmosphere 1010.0 10 < th dose independent rect. 18 3
768 183.13 radiation 10.0 10 < th dose independent rect. 18 3
772 183.13 temperature 10.0 10 > th dose independent rect. 21 21
779 183.15 wind 9.0 10 < th dose independent rect. 18 3
786 183.18 humidity 60.0 10 < th dose dependent rect. 18 1
791 183.18 radiation 20.0 270 < th dose dependent rect. 15 5
821 183.29 radiation 40.0 10 < th dose dependent rect. 18 3
830 183.33 precipitation 0.1 10 < th dose independent rect. 21 21
832 183.33 precipitation 0.1 10 < th dose dependent rect. 21 21
888 183.54 wind 5.0 10 < th dose independent rect. 16 1
900 183.57 radiation 1.0 270 < th dose dependent rect. 20 12
904 183.60 humidity 50.0 270 > th dose dependent rect. 16 4
913 183.63 wind 7.0 270 < th dose independent rect. 20 20
927 183.65 radiation 30.0 10 < th dose independent rect. 18 16
931 183.66 radiation 1.0 270 < th dose independent rect. 20 12
938 183.68 precipitation 0.1 30 > th dose independent rect. 22 22
973 183.75 atmosphere 995.0 10 > th dose independent rect. 21 21
995 183.82 precipitation 0.1 270 < th dose independent rect. 16 4
999 183.82 precipitation 0.1 270 < th dose dependent rect. 16 4