FiT-DB / Search/ Help/ Sample detail

Os12g0611700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.4 (0.0155) R2 : 0.0979
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.23 (0.0327) R2dN8 : 0.126 R2N8 : 0.0979
σ : 0.292
deviance : 39.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
24.95 0.235 12.4 0.23 0.449 0.303 0.261 0.553 0.276 17.2 0.03005 117 -- --
26.41 0.241 12.4 0.237 0.351 0.0998 0.529 -- 0.264 19.9 0.03005 117 -- --
25.12 0.233 12.4 0.221 0.45 0.3 -- 0.537 0.273 17.2 0.03999 116 -- --
26.53 0.24 12.3 0.235 0.437 0.301 -- -- 0.286 17.2 0.04 122 -- --
30.97 0.261 12.3 0.211 -- 0.232 -- 0.386 0.264 -- 0.03999 116 -- --
26.76 0.243 12.4 0.234 0.425 -- 0.59 -- 0.257 20.6 -- -- -- --
27.82 0.247 12.4 0.217 0.429 -- -- -- 0.258 20.3 -- -- -- --
31.93 0.264 12.3 0.225 -- 0.235 -- -- 0.268 -- 0.03999 116 -- --
28.1 0.247 12.3 -- 0.428 0.279 -- -- 0.26 17.3 0.03997 123 -- --
38.02 0.288 12.3 0.214 -- -- -- -- 0.254 -- -- -- -- --
29.06 0.252 12.4 -- 0.428 -- -- -- 0.234 20.3 -- -- -- --
33.26 0.269 12.4 -- -- 0.233 -- -- 0.243 -- 0.03999 116 -- --
39.22 0.292 12.4 -- -- -- -- -- 0.23 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.32 atmosphere 1005.0 10 > th dose dependent rect. 3 6
5 22.48 atmosphere 1005.0 270 > th dose dependent rect. 4 1
6 22.49 atmosphere 1005.0 270 > th dose dependent rect. 1 6
7 22.52 humidity 90.0 10 < th dose independent rect. 2 7
11 22.64 atmosphere 1005.0 270 > th dose dependent rect. 2 4
13 22.65 temperature 25.0 10 > th dose independent rect. 1 8
34 23.02 atmosphere 1005.0 30 > th dose independent rect. 4 5
56 23.24 atmosphere 1005.0 270 > th dose independent rect. 2 5
59 23.26 temperature 25.0 10 > th dose independent rect. 1 10
60 23.26 temperature 15.0 30 > th dose dependent rect. 4 5
65 23.29 atmosphere 1005.0 270 > th dose independent rect. 4 1
123 23.64 wind 5.0 30 < th dose independent rect. 4 5
130 23.67 humidity 50.0 30 > th dose independent rect. 9 8
143 23.70 temperature 10.0 1440 > th dose independent rect. 5 5
146 23.70 atmosphere 995.0 1440 > th dose independent rect. 5 5
147 23.70 atmosphere 1015.0 1440 < th dose independent rect. 5 5
148 23.70 temperature 10.0 1440 > th dose independent rect. 10 19
163 23.75 humidity 50.0 4320 > th dose independent rect. 5 5
164 23.75 temperature 10.0 10 > th dose independent rect. 9 7
166 23.75 atmosphere 1015.0 10 < th dose independent rect. 9 7
167 23.75 precipitation 0.1 10 < th dose independent rect. 9 7
168 23.75 temperature 10.0 10 > th dose independent rect. 16 17
170 23.75 precipitation 0.1 10 < th dose dependent rect. 9 7
175 23.77 wind 5.0 270 < th dose independent rect. 4 1
176 23.77 wind 1.0 270 > th dose independent rect. 14 17
177 23.77 precipitation 0.1 10 < th dose independent rect. 16 17
179 23.77 precipitation 0.1 10 < th dose dependent rect. 16 17
190 23.78 temperature 15.0 30 > th dose independent rect. 9 19
191 23.78 humidity 50.0 30 > th dose independent rect. 9 19
198 23.80 wind 9.0 30 < th dose independent rect. 9 7
201 23.81 atmosphere 995.0 10 > th dose independent rect. 9 7
207 23.83 wind 9.0 30 < th dose independent rect. 16 17
213 23.84 radiation 40.0 30 < th dose independent rect. 16 17
214 23.84 humidity 50.0 270 > th dose independent rect. 7 19
215 23.84 humidity 50.0 270 > th dose independent rect. 6 21
233 23.89 precipitation 0.1 30 < th dose independent rect. 4 5
240 23.89 atmosphere 995.0 10 > th dose independent rect. 16 17
242 23.89 precipitation 0.1 30 < th dose dependent rect. 4 5
247 23.90 temperature 10.0 30 > th dose independent rect. 4 5
249 23.90 temperature 30.0 30 < th dose independent rect. 4 5
250 23.90 humidity 50.0 30 > th dose independent rect. 4 5
252 23.90 atmosphere 995.0 30 > th dose independent rect. 4 5
253 23.90 atmosphere 1015.0 30 < th dose independent rect. 4 5
257 23.90 temperature 20.0 270 > th dose dependent rect. 4 1
259 23.90 wind 9.0 30 < th dose dependent rect. 4 5
264 23.91 wind 9.0 30 < th dose independent rect. 9 19
265 23.91 temperature 10.0 270 > th dose dependent rect. 4 1
271 23.92 precipitation 0.1 30 < th dose independent rect. 9 19
275 23.92 precipitation 0.1 30 < th dose dependent rect. 9 19
277 23.93 wind 5.0 270 < th dose independent rect. 2 5
279 23.93 wind 1.0 30 > th dose independent rect. 9 7
282 23.93 wind 5.0 270 < th dose independent rect. 17 10
284 23.93 atmosphere 995.0 30 > th dose independent rect. 9 19
287 23.94 radiation 1.0 10 > th dose independent rect. 9 7
298 23.95 humidity 50.0 270 > th dose independent rect. 7 7
305 23.96 wind 1.0 30 > th dose independent rect. 4 5
306 23.96 radiation 40.0 30 < th dose independent rect. 4 5
322 23.98 temperature 10.0 270 > th dose dependent rect. 2 6
324 23.99 wind 5.0 270 < th dose independent rect. 3 3
327 23.99 temperature 10.0 1440 > th dose independent rect. 10 7
331 23.99 precipitation 0.1 270 < th dose independent rect. 3 15
333 23.99 temperature 10.0 1440 > th dose independent rect. 17 17
342 23.99 precipitation 0.1 270 < th dose dependent rect. 3 15
347 24.00 temperature 15.0 270 > th dose independent rect. 18 9
348 24.00 humidity 50.0 10 > th dose independent rect. 17 16
359 24.01 precipitation 0.1 270 < th dose independent rect. 14 17
360 24.01 wind 9.0 270 < th dose independent rect. 5 23
365 24.01 precipitation 0.1 270 < th dose dependent rect. 14 17
366 24.02 wind 1.0 270 > th dose independent rect. 3 2
378 24.02 wind 9.0 270 < th dose independent rect. 7 7
401 24.03 temperature 10.0 270 > th dose independent rect. 7 7
402 24.03 atmosphere 995.0 270 > th dose independent rect. 7 7
403 24.03 atmosphere 1015.0 270 < th dose independent rect. 7 7
404 24.03 temperature 10.0 270 > th dose independent rect. 14 17
406 24.03 atmosphere 1015.0 10 < th dose independent rect. 16 17
421 24.05 precipitation 0.1 270 < th dose independent rect. 7 7
422 24.05 temperature 15.0 270 > th dose independent rect. 3 15
427 24.05 precipitation 0.1 270 < th dose dependent rect. 7 7
439 24.06 radiation 1.0 30 > th dose independent rect. 18 15
448 24.07 precipitation 0.1 270 < th dose independent rect. 4 1
450 24.07 humidity 60.0 270 > th dose independent rect. 18 9
452 24.07 precipitation 0.1 270 < th dose dependent rect. 4 1
458 24.08 radiation 1.0 270 < th dose independent rect. 18 9
465 24.09 radiation 1.0 90 < th dose independent sin 12 NA
467 24.09 temperature 30.0 270 < th dose independent rect. 18 9
504 24.12 precipitation 0.1 270 < th dose independent rect. 18 9
511 24.12 atmosphere 1015.0 30 < th dose independent rect. 9 19
512 24.12 radiation 1.0 90 < th dose dependent sin 12 NA
516 24.12 radiation 10.0 270 < th dose dependent rect. 18 9
517 24.12 precipitation 0.1 270 < th dose dependent rect. 18 9
518 24.13 humidity 80.0 270 > th dose independent rect. 4 1
531 24.14 temperature 10.0 270 > th dose independent rect. 4 1
533 24.14 temperature 30.0 270 < th dose independent rect. 4 1
534 24.14 humidity 50.0 270 > th dose independent rect. 4 1
537 24.14 atmosphere 995.0 270 > th dose independent rect. 4 1
538 24.14 atmosphere 1010.0 270 < th dose independent rect. 4 1
540 24.14 radiation 1.0 270 < th dose independent rect. 4 1
549 24.14 atmosphere 995.0 270 > th dose independent rect. 18 9
556 24.14 atmosphere 1015.0 270 < th dose independent rect. 3 15
561 24.14 wind 9.0 270 < th dose independent rect. 7 19
562 24.14 temperature 10.0 270 > th dose independent rect. 5 23
563 24.14 wind 9.0 270 < th dose dependent rect. 4 1
564 24.14 radiation 1.0 270 < th dose dependent rect. 4 1
581 24.15 atmosphere 995.0 90 > th dose dependent rect. 19 9
598 24.17 radiation 1.0 30 > th dose independent rect. 5 4
605 24.17 precipitation 0.1 270 < th dose independent rect. 2 5
627 24.17 precipitation 0.1 270 < th dose dependent rect. 2 5
629 24.17 atmosphere 1005.0 10 > th dose dependent rect. 12 11
638 24.18 wind 9.0 270 < th dose independent rect. 14 17
640 24.18 wind 9.0 270 < th dose independent rect. 6 21
700 24.20 wind 9.0 270 < th dose dependent rect. 2 5
704 24.21 precipitation 0.1 270 < th dose independent rect. 3 3
715 24.21 precipitation 0.1 270 < th dose dependent rect. 3 3
746 24.23 wind 1.0 270 > th dose independent rect. 2 5
785 24.24 atmosphere 995.0 270 > th dose independent rect. 14 17
807 24.25 wind 1.0 30 > th dose independent rect. 2 7
815 24.25 precipitation 0.1 270 < th dose independent rect. 7 19
821 24.25 precipitation 0.1 270 < th dose dependent rect. 7 19
827 24.26 temperature 10.0 270 > th dose independent rect. 2 5
835 24.26 atmosphere 995.0 270 > th dose independent rect. 2 5
837 24.26 atmosphere 1015.0 270 < th dose independent rect. 2 5
849 24.26 temperature 10.0 270 > th dose independent rect. 7 19
877 24.27 temperature 10.0 270 > th dose dependent rect. 18 9
880 24.28 wind 1.0 270 > th dose independent rect. 1 7
895 24.29 humidity 80.0 270 > th dose independent rect. 3 3
897 24.29 radiation 10.0 270 < th dose independent rect. 3 3
905 24.29 atmosphere 995.0 270 > th dose independent rect. 7 19
913 24.29 wind 9.0 270 < th dose dependent rect. 18 9
953 24.31 wind 9.0 270 < th dose independent rect. 3 15
967 24.31 radiation 1.0 90 > th dose dependent rect. 17 14
972 24.32 radiation 1.0 270 > th dose independent rect. 7 7
989 24.33 temperature 10.0 270 > th dose independent rect. 3 3
991 24.33 temperature 30.0 270 < th dose independent rect. 3 3
992 24.33 humidity 50.0 270 > th dose independent rect. 3 3
995 24.33 atmosphere 995.0 270 > th dose independent rect. 3 3
996 24.33 atmosphere 1015.0 270 < th dose independent rect. 3 3