FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0609000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.55 (0.0315) R2 : 0.328
β1 : 1.11 (0.118) R2dD : 0.144 R2D : 0.00855
β2 : -- (--) R2dC : -- R2C : --
β3 : -2.08 (0.152) R2dE : 0.315 R2E : 0.149
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.393 (0.0698) R2dN8 : 0.0686 R2N8 : -0.0438
σ : 0.584
deviance : 157.15
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 11.59
memory length : 309
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
155.94 0.587 4.55 1.09 0.188 -1.97 0.111 0.11 0.376 8.14 11.2 245 -- --
155.73 0.581 4.55 1.08 0.236 -1.97 0.0926 -- 0.367 8.57 12.45 199 -- --
155.77 0.581 4.55 1.08 0.247 -1.95 -- 0.0412 0.363 8.56 10.57 200 -- --
155.7 0.581 4.55 1.09 0.251 -2.02 -- -- 0.375 9.07 10.11 189 -- --
157.14 0.584 4.55 1.13 -- -2.08 -- 0.137 0.399 -- 11.46 309 -- --
195.64 0.656 4.6 0.658 0.678 -- 0.79 -- 0.0969 5.35 -- -- -- --
197.19 0.658 4.6 0.66 0.684 -- -- -- 0.0934 5.4 -- -- -- --
157.15 0.584 4.55 1.11 -- -2.08 -- -- 0.393 -- 11.59 309 -- --
183.57 0.631 4.59 -- 0.386 -1.52 -- -- 0.198 7.61 -44.99 125 -- --
221.54 0.695 4.61 0.683 -- -- -- -- 0.11 -- -- -- -- --
208.67 0.676 4.62 -- 0.695 -- -- -- 0.0199 5.36 -- -- -- --
187.32 0.637 4.59 -- -- -1.7 -- -- 0.226 -- -35.68 292 -- --
233.84 0.714 4.63 -- -- -- -- -- 0.0345 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 147.26 wind 9.0 43200 > th dose dependent rect. 18 4
4 149.07 wind 9.0 43200 > th dose independent rect. 18 3
5 149.71 precipitation 0.1 14400 > th dose dependent rect. 17 1
9 150.03 wind 9.0 43200 < th dose independent rect. 18 3
10 150.11 wind 9.0 43200 > th dose dependent rect. 18 12
11 150.12 atmosphere 995.0 14400 > th dose independent rect. 12 6
12 150.15 atmosphere 995.0 14400 > th dose independent rect. 10 8
13 150.17 precipitation 0.1 14400 > th dose independent rect. 17 1
15 150.19 atmosphere 995.0 14400 < th dose independent rect. 15 2
16 150.23 atmosphere 995.0 14400 > th dose independent rect. 8 10
17 150.23 precipitation 0.1 14400 > th dose dependent rect. 20 2
19 150.24 wind 9.0 43200 > th dose dependent rect. 20 1
20 150.26 atmosphere 995.0 14400 > th dose independent rect. 10 10
21 150.29 atmosphere 995.0 14400 < th dose independent rect. 14 4
37 150.34 atmosphere 995.0 14400 > th dose independent rect. 8 12
72 150.43 atmosphere 995.0 14400 > th dose independent rect. 15 2
88 150.49 atmosphere 995.0 14400 < th dose dependent rect. 15 3
102 150.66 wind 9.0 14400 < th dose independent rect. 20 1
156 150.85 wind 9.0 14400 > th dose independent rect. 20 1
161 150.92 precipitation 0.1 14400 < th dose independent rect. 17 1
163 150.92 precipitation 0.1 14400 < th dose dependent rect. 17 1
211 152.08 wind 9.0 43200 > th dose dependent rect. 18 7
229 152.47 wind 5.0 14400 > th dose dependent rect. 20 1
267 153.40 atmosphere 1005.0 14400 > th dose independent rect. 22 1
283 153.41 temperature 30.0 270 < th dose dependent rect. 22 22
322 154.69 wind 5.0 43200 > th dose independent rect. 17 1
339 154.90 temperature 30.0 1440 < th dose dependent rect. 17 1
345 155.00 atmosphere 1005.0 14400 < th dose independent rect. 22 1
347 155.00 temperature 10.0 270 > th dose dependent rect. 4 23
353 155.09 wind 9.0 14400 > th dose independent rect. 18 7
362 155.17 temperature 10.0 270 > th dose dependent rect. 1 23
382 155.50 temperature 20.0 1440 > th dose dependent rect. 17 1
388 155.58 wind 9.0 43200 > th dose independent rect. 18 12
389 155.59 temperature 15.0 270 > th dose dependent rect. 17 23
395 155.68 wind 9.0 14400 < th dose independent rect. 18 7
404 155.78 temperature 25.0 1440 < th dose independent rect. 17 1
405 155.80 atmosphere 1005.0 14400 < th dose dependent rect. 23 2
439 156.08 temperature 10.0 270 > th dose dependent no NA NA
453 156.18 wind 5.0 43200 > th dose dependent rect. 14 11
474 156.31 precipitation 0.1 14400 > th dose independent rect. 20 1
485 156.34 wind 9.0 14400 < th dose independent rect. 18 10
493 156.38 wind 5.0 43200 > th dose independent rect. 14 11
498 156.40 precipitation 0.1 14400 < th dose independent rect. 20 1
501 156.40 precipitation 0.1 14400 < th dose dependent rect. 20 1
509 156.45 wind 7.0 43200 < th dose independent rect. 14 11
511 156.46 precipitation 0.1 4320 > th dose dependent rect. 14 4
530 156.55 wind 7.0 43200 < th dose independent rect. 14 13
543 156.60 temperature 25.0 10 < th dose dependent rect. 24 22
577 156.73 temperature 15.0 270 > th dose dependent rect. 19 23
593 156.80 atmosphere 1000.0 14400 < th dose dependent rect. 20 1
652 156.93 atmosphere 1000.0 14400 < th dose dependent rect. 4 1
702 157.05 temperature 25.0 1440 > th dose independent rect. 17 1
706 157.05 temperature 20.0 90 > th dose dependent rect. 23 23
711 157.06 atmosphere 1005.0 14400 < th dose independent rect. 20 12
738 157.10 atmosphere 1000.0 14400 < th dose independent rect. 4 9
750 157.12 temperature 20.0 90 > th dose dependent rect. 21 23
752 157.13 wind 7.0 43200 < th dose independent rect. 14 18
777 157.17 atmosphere 1000.0 14400 < th dose dependent rect. 7 1
787 157.18 temperature 15.0 270 > th dose dependent rect. 6 23
793 157.19 atmosphere 1000.0 14400 < th dose dependent sin 1 NA
803 157.20 atmosphere 1000.0 14400 < th dose dependent rect. 4 4
810 157.22 wind 7.0 43200 > th dose independent rect. 14 18
830 157.24 temperature 10.0 10 > th dose dependent no NA NA
856 157.27 atmosphere 1000.0 14400 < th dose dependent rect. 4 17
857 157.27 atmosphere 1000.0 14400 < th dose dependent rect. 19 18
861 157.28 atmosphere 1005.0 14400 > th dose independent rect. 20 12
869 157.28 temperature 30.0 30 < th dose dependent rect. 3 23
953 157.34 atmosphere 1000.0 14400 < th dose dependent rect. 22 17
956 157.35 temperature 25.0 1440 < th dose independent rect. 16 4