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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0608700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.74 (0.0373) R2 : 0.682
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.76 (0.0905) R2dC : 0.686 R2C : 0.599
β3 : -1.04 (0.125) R2dE : 0.0525 R2E : -0.0208
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.368 (0.0794) R2dN8 : 0.02 R2N8 : 0.0265
σ : 0.695
deviance : 222.94
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_____
C
peak time of C : 23.8
E
wheather : temperature
threshold : 28.93
memory length : 900
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
212.71 0.685 6 -2.05 2.7 0.515 0.816 -12.1 0.193 0.118 28.76 1219 -- --
223.63 0.696 5.71 0.219 2.67 -0.856 0.761 -- 0.556 24 28.66 907 -- --
215.35 0.683 6 -2.04 2.69 0.513 -- -11.7 0.208 0.107 28.9 1266 -- --
221.63 0.693 5.74 0.224 2.76 -1.07 -- -- 0.386 23.8 28.87 900 -- --
505.15 1.05 5.61 0.585 -- -2.83 -- 1.33 0.696 -- 25.5 3193 -- --
254.75 0.748 5.71 0.0277 2.6 -- 0.459 -- 0.496 0.00446 -- -- -- --
255.66 0.749 5.71 0.00956 2.59 -- -- -- 0.494 24 -- -- -- --
497.36 1.04 5.59 0.478 -- -2.69 -- -- 0.812 -- 24.2 1671 -- --
222.94 0.695 5.74 -- 2.76 -1.04 -- -- 0.368 23.8 28.93 900 -- --
679.12 1.22 5.65 0.09 -- -- -- -- 0.53 -- -- -- -- --
255.66 0.748 5.71 -- 2.59 -- -- -- 0.493 24 -- -- -- --
503.25 1.05 5.6 -- -- -2.62 -- -- 0.753 -- 24.2 1671 -- --
679.33 1.22 5.66 -- -- -- -- -- 0.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 207.32 humidity 70 720 > th dose independent rect. 17 4
5 209.95 temperature 25 720 > th dose dependent sin 11 NA
7 210.47 humidity 70 720 > th dose independent rect. 16 15
9 210.61 temperature 25 720 > th dose dependent rect. 16 18
10 210.75 temperature 25 4320 > th dose dependent rect. 19 11
12 210.83 humidity 70 720 > th dose independent rect. 17 10
20 211.23 temperature 25 4320 > th dose dependent rect. 20 1
26 211.39 temperature 30 720 < th dose independent rect. 15 6
34 211.74 humidity 50 720 > th dose dependent rect. 16 5
39 211.80 humidity 70 720 > th dose independent rect. 17 12
50 212.22 humidity 70 1440 > th dose independent rect. 17 2
69 212.72 temperature 25 4320 > th dose independent rect. 1 8
77 212.93 temperature 25 4320 > th dose independent rect. 2 6
87 213.14 temperature 25 4320 < th dose independent rect. 3 5
107 213.48 humidity 70 720 < th dose independent rect. 16 3
113 213.59 temperature 30 1440 > th dose dependent rect. 13 3
157 214.14 temperature 25 4320 > th dose dependent sin 11 NA
158 214.15 temperature 25 4320 < th dose independent rect. 5 1
167 214.28 humidity 70 720 < th dose independent rect. 16 16
185 214.52 humidity 70 720 > th dose independent sin 13 NA
211 214.75 temperature 30 720 < th dose independent rect. 15 16
258 215.01 temperature 25 4320 > th dose independent rect. 19 14
262 215.04 temperature 30 720 < th dose independent rect. 15 14
270 215.08 temperature 30 1440 > th dose independent rect. 10 4
341 215.42 temperature 30 1440 < th dose independent rect. 10 4
377 215.58 temperature 25 4320 > th dose independent sin 9 NA
379 215.59 humidity 70 720 < th dose independent sin 14 NA
395 215.66 temperature 30 1440 > th dose dependent sin 20 NA
502 216.01 temperature 30 1440 > th dose dependent no NA NA
598 216.03 humidity 90 720 < th dose dependent rect. 12 12
676 216.34 wind 1 14400 < th dose independent rect. 10 1
677 216.34 temperature 30 1440 > th dose independent rect. 10 1
684 216.39 temperature 30 1440 > th dose independent rect. 18 20
745 216.62 humidity 80 720 < th dose dependent rect. 14 7
752 216.64 temperature 30 1440 < th dose independent rect. 18 20
815 216.85 humidity 80 720 < th dose dependent sin 16 NA
818 216.87 temperature 30 1440 < th dose independent rect. 2 12
819 216.87 temperature 30 1440 < th dose independent rect. 24 14
823 216.89 temperature 30 1440 < th dose independent rect. 4 10
826 216.89 humidity 50 720 > th dose dependent sin 18 NA
834 216.92 temperature 30 1440 < th dose independent rect. 20 18
856 216.94 temperature 30 720 > th dose independent sin 14 NA
868 216.96 temperature 30 1440 < th dose independent rect. 10 1
870 216.96 temperature 30 1440 < th dose independent rect. 6 8
880 216.97 wind 1 14400 < th dose dependent rect. 10 1
954 217.25 temperature 25 4320 < th dose independent sin 8 NA
983 217.35 temperature 25 4320 < th dose independent rect. 19 14