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Os12g0607100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Heterochromatin protein (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.7 (0.0196) R2 : 0.396
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.858 (0.0498) R2dC : 0.394 R2C : 0.395
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0426 (0.0412) R2dN8 : 0.00183 R2N8 : 0.00245
σ : 0.37
deviance : 62.4
__
_____
C
peak time of C : 15.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.27 0.309 11.7 0.652 0.656 0.736 0.556 0.561 -0.00359 17.5 2.28 79 -- --
43.88 0.309 11.7 0.663 0.674 0.699 0.598 -- 0.00317 17.3 2.204 78 -- --
44.01 0.309 11.7 0.648 0.663 0.715 -- 0.642 -0.000178 17.4 2.42 79 -- --
44.85 0.312 11.7 0.668 0.671 0.689 -- -- 0.00371 17.4 1.604 72 -- --
58.01 0.355 11.7 0.619 -- 0.964 -- 0.669 -0.0411 -- -5.142 269 -- --
49.79 0.331 11.7 0.656 0.868 -- 0.567 -- 0.0282 15.8 -- -- -- --
50.75 0.334 11.7 0.665 0.871 -- -- -- 0.0314 15.8 -- -- -- --
58.95 0.358 11.7 0.617 -- 0.967 -- -- -0.0451 -- -18.34 275 -- --
56.5 0.35 11.7 -- 0.637 0.696 -- -- -0.075 17.4 1.308 92 -- --
92.66 0.45 11.7 0.629 -- -- -- -- 0.00821 -- -- -- -- --
62.4 0.37 11.7 -- 0.858 -- -- -- -0.0426 15.8 -- -- -- --
68.98 0.387 11.7 -- -- 0.979 -- -- -0.114 -- -12.8 288 -- --
103.08 0.474 11.7 -- -- -- -- -- -0.0615 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.33 temperature 10.0 90 > th dose dependent rect. 8 7
2 39.44 temperature 10.0 270 > th dose dependent rect. 6 7
3 39.58 radiation 40.0 90 < th dose independent rect. 3 16
9 39.86 temperature 15.0 270 > th dose dependent rect. 9 1
12 39.92 radiation 40.0 90 < th dose dependent rect. 3 16
15 40.02 temperature 10.0 10 > th dose dependent rect. 8 7
36 40.51 radiation 40.0 90 < th dose independent rect. 13 19
55 40.67 radiation 1.0 270 > th dose dependent rect. 9 1
60 40.78 temperature 15.0 90 > th dose independent rect. 15 17
62 40.80 radiation 40.0 90 < th dose dependent rect. 13 19
68 40.82 radiation 40.0 270 < th dose independent rect. 11 19
69 40.83 wind 5.0 90 < th dose independent rect. 3 5
75 40.89 precipitation 0.1 90 < th dose independent rect. 8 7
77 40.89 precipitation 0.1 90 < th dose dependent rect. 8 7
79 40.91 temperature 15.0 90 > th dose independent rect. 8 7
82 40.96 humidity 90.0 90 < th dose independent rect. 8 7
86 40.99 wind 1.0 90 > th dose independent rect. 8 7
93 41.02 atmosphere 1015.0 90 < th dose independent rect. 8 7
99 41.04 radiation 1.0 90 > th dose independent rect. 8 7
101 41.09 wind 9.0 90 < th dose independent rect. 8 7
102 41.10 precipitation 0.1 90 < th dose independent rect. 3 5
103 41.10 precipitation 0.1 90 < th dose dependent rect. 3 5
104 41.11 wind 9.0 90 < th dose independent rect. 8 19
107 41.13 radiation 40.0 90 < th dose independent rect. 15 17
109 41.15 radiation 10.0 10 > th dose independent rect. 9 6
112 41.15 radiation 40.0 10 < th dose dependent rect. 12 21
113 41.16 atmosphere 995.0 90 > th dose independent rect. 8 7
114 41.16 radiation 40.0 10 < th dose independent rect. 4 16
115 41.17 radiation 30.0 270 < th dose dependent sin 7 NA
122 41.19 temperature 10.0 90 > th dose independent rect. 3 5
124 41.19 temperature 30.0 90 < th dose independent rect. 3 5
125 41.19 humidity 50.0 90 > th dose independent rect. 3 5
127 41.19 atmosphere 995.0 90 > th dose independent rect. 3 5
128 41.19 atmosphere 1015.0 90 < th dose independent rect. 3 5
129 41.19 temperature 10.0 90 > th dose independent rect. 8 19
130 41.19 precipitation 0.1 90 < th dose independent rect. 8 19
131 41.19 precipitation 0.1 90 < th dose dependent rect. 8 19
132 41.20 wind 9.0 90 < th dose independent rect. 15 17
134 41.20 radiation 1.0 90 > th dose dependent rect. 8 6
136 41.21 wind 5.0 270 < th dose independent rect. 24 7
143 41.23 atmosphere 995.0 90 > th dose independent rect. 15 17
146 41.24 radiation 40.0 90 < th dose independent rect. 3 5
151 41.25 radiation 40.0 10 < th dose independent rect. 12 21
153 41.26 temperature 15.0 270 > th dose independent rect. 6 7
157 41.29 humidity 50.0 90 > th dose independent rect. 8 7
159 41.30 precipitation 0.1 10 < th dose independent rect. 9 17
160 41.30 radiation 40.0 90 < th dose dependent sin 3 NA
162 41.30 precipitation 0.1 10 < th dose dependent rect. 9 17
164 41.31 radiation 40.0 270 < th dose independent rect. 11 8
168 41.31 temperature 10.0 270 > th dose dependent rect. 19 17
169 41.32 wind 5.0 10 < th dose independent rect. 2 7
170 41.32 precipitation 0.1 270 < th dose independent rect. 6 8
173 41.32 precipitation 0.1 270 < th dose dependent rect. 6 8
176 41.32 radiation 40.0 10 < th dose dependent rect. 4 16
178 41.33 radiation 30.0 90 < th dose independent rect. 2 7
195 41.34 humidity 50.0 270 > th dose independent rect. 6 7
204 41.35 precipitation 0.1 10 < th dose independent rect. 2 7
206 41.35 precipitation 0.1 10 < th dose dependent rect. 2 7
208 41.36 wind 1.0 270 > th dose independent rect. 13 17
213 41.37 temperature 10.0 10 > th dose dependent rect. 9 17
214 41.38 humidity 80.0 10 < th dose independent rect. 9 6
215 41.38 radiation 1.0 270 > th dose independent rect. 6 7
227 41.40 precipitation 0.1 270 < th dose independent rect. 14 16
231 41.40 radiation 20.0 270 < th dose dependent rect. 1 7
235 41.40 precipitation 0.1 270 < th dose dependent rect. 14 16
236 41.41 wind 1.0 270 > th dose independent rect. 24 7
238 41.41 wind 9.0 270 < th dose independent rect. 6 8
246 41.42 radiation 1.0 270 > th dose dependent sin 8 NA
248 41.42 temperature 10.0 90 > th dose dependent rect. 8 18
250 41.43 wind 9.0 10 < th dose independent rect. 9 17
254 41.44 wind 1.0 270 > th dose independent rect. 3 2
255 41.44 wind 5.0 270 < th dose independent rect. 3 2
258 41.44 atmosphere 995.0 270 > th dose independent rect. 6 7
259 41.44 atmosphere 1015.0 270 < th dose independent rect. 6 7
275 41.46 temperature 10.0 10 > th dose independent rect. 2 7
277 41.46 temperature 30.0 10 < th dose independent rect. 2 7
278 41.46 humidity 50.0 10 > th dose independent rect. 2 7
280 41.46 atmosphere 995.0 10 > th dose independent rect. 2 7
281 41.46 atmosphere 1015.0 10 < th dose independent rect. 2 7
283 41.46 temperature 10.0 10 > th dose independent rect. 9 17
294 41.48 radiation 20.0 270 < th dose independent rect. 24 8
295 41.48 humidity 50.0 270 > th dose independent rect. 19 16
319 41.51 temperature 30.0 270 < th dose dependent rect. 3 2
321 41.51 atmosphere 1000.0 90 > th dose dependent rect. 2 6
335 41.54 atmosphere 995.0 270 > th dose independent rect. 13 17
391 41.60 temperature 10.0 270 > th dose independent rect. 11 8
392 41.60 atmosphere 1015.0 270 < th dose independent rect. 11 8
393 41.60 temperature 10.0 270 > th dose independent rect. 19 16
394 41.60 atmosphere 995.0 270 > th dose independent rect. 19 16
412 41.63 wind 9.0 270 < th dose independent rect. 19 16
421 41.64 humidity 50.0 270 > th dose dependent rect. 18 8
422 41.65 radiation 1.0 270 > th dose independent rect. 9 1
442 41.68 temperature 10.0 1440 > th dose independent rect. 3 7
445 41.68 atmosphere 995.0 1440 > th dose independent rect. 3 7
446 41.68 precipitation 0.1 270 < th dose independent rect. 11 8
447 41.68 temperature 10.0 1440 > th dose independent rect. 10 17
458 41.68 precipitation 0.1 270 < th dose dependent rect. 11 8
472 41.72 temperature 15.0 270 > th dose independent rect. 9 1
474 41.72 temperature 10.0 1440 > th dose independent rect. 9 7
480 41.72 temperature 10.0 1440 > th dose independent rect. 16 17
493 41.74 wind 1.0 90 > th dose independent rect. 3 5
498 41.74 radiation 40.0 10 < th dose independent rect. 2 7
512 41.75 radiation 1.0 90 > th dose dependent sin 3 NA
538 41.78 wind 1.0 270 > th dose independent rect. 11 8
539 41.78 atmosphere 995.0 270 > th dose independent rect. 11 8
555 41.80 humidity 50.0 270 > th dose independent rect. 9 1
571 41.80 radiation 1.0 270 < th dose dependent rect. 18 8
574 41.81 precipitation 0.1 270 < th dose independent rect. 3 2
577 41.81 precipitation 0.1 270 < th dose dependent rect. 3 2
586 41.82 radiation 1.0 270 < th dose independent rect. 18 8
588 41.82 wind 9.0 270 < th dose independent rect. 5 22
597 41.83 humidity 60.0 270 > th dose independent rect. 18 8
605 41.84 wind 7.0 270 < th dose independent rect. 9 1
639 41.86 temperature 10.0 270 > th dose independent rect. 18 8
646 41.86 temperature 10.0 270 > th dose independent rect. 2 16
647 41.86 atmosphere 1015.0 270 < th dose independent rect. 2 16
653 41.86 temperature 30.0 90 < th dose dependent rect. 3 5
655 41.87 precipitation 0.1 270 < th dose independent rect. 9 1
657 41.87 wind 9.0 270 < th dose independent rect. 11 8
659 41.87 precipitation 0.1 270 < th dose independent rect. 19 16
660 41.87 atmosphere 1015.0 90 < th dose independent rect. 15 17
664 41.87 precipitation 0.1 270 < th dose dependent rect. 9 1
668 41.87 precipitation 0.1 270 < th dose dependent rect. 19 16
675 41.88 wind 9.0 270 < th dose independent rect. 18 8
676 41.88 radiation 30.0 90 < th dose independent rect. 2 9
691 41.89 wind 9.0 90 < th dose dependent rect. 2 6
711 41.90 precipitation 0.1 270 < th dose independent rect. 2 16
718 41.90 precipitation 0.1 270 < th dose dependent rect. 2 16
720 41.91 atmosphere 995.0 270 > th dose independent rect. 9 1
721 41.91 atmosphere 1015.0 270 < th dose independent rect. 9 1
723 41.91 temperature 10.0 270 > th dose independent rect. 3 2
725 41.91 temperature 30.0 270 < th dose independent rect. 3 2
726 41.91 humidity 50.0 270 > th dose independent rect. 3 2
729 41.91 atmosphere 995.0 270 > th dose independent rect. 3 2
730 41.91 atmosphere 1010.0 270 < th dose independent rect. 3 2
732 41.91 radiation 20.0 270 < th dose independent rect. 3 2
741 41.91 temperature 10.0 270 > th dose independent rect. 5 22
742 41.91 temperature 10.0 270 > th dose independent rect. 10 23
752 41.92 radiation 40.0 270 < th dose dependent rect. 3 2
755 41.92 radiation 1.0 10 > th dose dependent rect. 8 7
771 41.93 atmosphere 995.0 270 > th dose independent rect. 2 16
777 41.93 atmosphere 995.0 90 > th dose independent rect. 8 19
780 41.93 radiation 20.0 270 < th dose dependent rect. 3 2
786 41.94 radiation 1.0 270 < th dose dependent rect. 3 2
803 41.96 radiation 1.0 270 < th dose independent rect. 3 2
822 41.97 temperature 30.0 270 < th dose independent rect. 18 8
830 41.98 humidity 50.0 90 > th dose independent rect. 8 19
859 42.00 atmosphere 995.0 270 > th dose independent rect. 18 8
875 42.02 wind 1.0 270 > th dose independent rect. 9 1
914 42.03 wind 9.0 1440 < th dose independent rect. 3 6
918 42.03 humidity 50.0 1440 > th dose independent rect. 3 6
921 42.03 precipitation 0.1 90 < th dose independent rect. 19 8
933 42.03 precipitation 0.1 90 < th dose dependent rect. 19 8
948 42.04 wind 9.0 270 < th dose dependent rect. 6 7
983 42.06 radiation 40.0 90 < th dose dependent rect. 3 6
987 42.06 temperature 10.0 10 > th dose dependent rect. 9 15