FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0606000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF26 domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0509) R2 : 0.279
β1 : 2.11 (0.183) R2dD : 0.221 R2D : 0.21
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.569 (0.103) R2dE : 0.0639 R2E : 0.0544
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0531 (0.12) R2dN8 : 0.00045 R2N8 : 0.0086
σ : 0.926
deviance : 392.26
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 24.3
memory length : 59
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
375.59 0.911 3.9 2.05 0.595 0.686 0.551 0.352 -0.00597 19.1 24.6 83 -- --
376.13 0.903 3.88 2.15 0.59 0.696 0.52 -- 0.0256 19.2 24.56 82 -- --
376.32 0.904 3.9 2.04 0.589 0.667 -- 0.318 -0.0125 19.3 24.56 82 -- --
376.77 0.904 3.89 2.13 0.589 0.683 -- -- 0.0223 19.3 24.54 82 -- --
389.42 0.924 3.91 1.89 -- 0.538 -- 0.724 -0.132 -- 24.3 59 -- --
404.57 0.943 3.97 1.93 0.504 -- 0.104 -- -0.36 22.1 -- -- -- --
404.61 0.942 3.97 1.92 0.504 -- -- -- -0.361 22.1 -- -- -- --
392.26 0.926 3.89 2.11 -- 0.569 -- -- -0.0531 -- 24.3 59 -- --
491.41 1.04 3.98 -- 0.458 0.388 -- -- -0.381 20.5 24.8 71 -- --
419.96 0.958 3.96 1.93 -- -- -- -- -0.36 -- -- -- -- --
502.18 1.05 4.02 -- 0.514 -- -- -- -0.575 22.4 -- -- -- --
503.16 1.05 3.96 -- -- 0.4 -- -- -0.38 -- 24.8 71 -- --
518.31 1.06 4.01 -- -- -- -- -- -0.574 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 369.20 temperature 15 10 > th dose dependent rect. 5 12
4 372.43 wind 3 43200 > th dose independent rect. 1 1
8 374.47 temperature 20 30 > th dose dependent rect. 19 22
9 374.55 temperature 15 720 > th dose dependent rect. 4 2
10 374.73 wind 3 43200 < th dose independent rect. 1 1
12 374.77 temperature 15 10 > th dose dependent rect. 5 19
14 375.01 temperature 25 90 < th dose independent rect. 1 18
15 375.05 temperature 25 90 < th dose independent rect. 1 22
19 375.55 temperature 15 10 > th dose dependent rect. 5 22
20 375.62 temperature 25 90 < th dose independent rect. 1 20
22 375.68 wind 9 14400 > th dose independent rect. 6 7
27 375.88 temperature 25 90 > th dose independent rect. 19 22
30 375.95 wind 9 14400 > th dose independent rect. 5 9
32 376.06 wind 9 14400 > th dose independent rect. 10 3
35 376.08 temperature 10 270 > th dose dependent rect. 19 14
37 376.15 wind 9 14400 > th dose independent rect. 9 5
42 376.25 wind 9 14400 > th dose dependent rect. 5 9
43 376.25 temperature 30 30 < th dose dependent rect. 24 19
45 376.31 wind 9 14400 > th dose dependent rect. 11 2
46 376.32 wind 9 14400 > th dose independent rect. 1 13
47 376.32 temperature 25 90 < th dose independent rect. 7 22
54 376.42 wind 9 14400 > th dose dependent rect. 9 5
58 376.50 humidity 90 4320 < th dose independent rect. 17 10
60 376.52 temperature 10 90 > th dose dependent rect. 4 23
63 376.56 temperature 25 10 < th dose independent rect. 3 16
68 376.66 temperature 25 10 < th dose independent rect. 24 20
73 376.73 wind 9 14400 > th dose dependent rect. 1 13
77 376.78 wind 3 43200 > th dose independent rect. 23 3
82 376.84 temperature 25 10 < th dose independent rect. 24 22
83 376.85 wind 1 43200 > th dose dependent rect. 1 1
100 377.12 humidity 90 4320 < th dose independent rect. 15 12
122 377.36 wind 3 43200 < th dose independent rect. 23 3
139 377.59 temperature 25 90 < th dose independent rect. 9 20
145 377.64 humidity 90 4320 > th dose independent rect. 20 6
149 377.71 humidity 90 4320 < th dose independent rect. 20 6
154 377.76 temperature 10 270 > th dose dependent rect. 4 20
157 377.80 humidity 90 4320 > th dose independent rect. 17 9
166 377.94 temperature 25 90 > th dose independent rect. 1 23
168 377.95 temperature 25 90 > th dose independent rect. 7 17
175 378.06 humidity 90 4320 > th dose independent rect. 21 3
177 378.10 wind 9 14400 < th dose independent rect. 6 8
184 378.15 temperature 25 90 < th dose independent rect. 9 23
188 378.19 humidity 90 4320 < th dose independent sin 15 NA
195 378.23 wind 9 14400 < th dose independent rect. 4 10
198 378.25 temperature 30 30 < th dose dependent rect. 24 14
204 378.31 temperature 25 90 > th dose independent rect. 6 23
216 378.39 wind 9 14400 < th dose independent rect. 1 13
308 379.13 humidity 90 4320 < th dose independent rect. 21 1
336 379.28 wind 9 14400 > th dose dependent sin 4 NA
357 379.43 temperature 25 90 > th dose independent rect. 13 23
364 379.47 humidity 90 4320 < th dose independent rect. 1 1
383 379.55 temperature 25 90 < th dose independent rect. 19 23
385 379.56 temperature 25 90 < th dose independent rect. 13 23
407 379.69 temperature 25 90 < th dose independent no NA NA
409 379.69 temperature 25 720 < th dose dependent rect. 2 18
410 379.71 wind 9 14400 > th dose independent sin 4 NA
421 379.78 wind 9 14400 < th dose independent rect. 11 1
532 380.26 humidity 90 4320 > th dose independent sin 14 NA
548 380.30 humidity 90 4320 > th dose independent rect. 21 1
563 380.34 temperature 15 30 > th dose dependent rect. 7 17
591 380.49 temperature 25 30 > th dose independent rect. 1 16
608 380.53 temperature 25 90 > th dose independent no NA NA
622 380.57 wind 1 43200 > th dose dependent rect. 23 4
625 380.58 temperature 25 720 < th dose dependent rect. 5 15
629 380.59 temperature 30 1440 < th dose dependent rect. 2 2
636 380.63 temperature 10 1440 > th dose dependent rect. 2 1
661 380.73 humidity 90 4320 > th dose independent rect. 17 14
666 380.74 temperature 25 720 < th dose dependent sin 0 NA
691 380.81 temperature 25 10 < th dose dependent sin 23 NA
768 381.06 wind 9 43200 < th dose dependent rect. 1 1
858 381.37 temperature 20 30 > th dose dependent sin 4 NA
874 381.42 humidity 90 4320 > th dose independent rect. 14 17
911 381.59 temperature 25 1440 < th dose dependent rect. 12 17
918 381.61 temperature 25 10 < th dose independent rect. 6 23
934 381.64 temperature 25 10 > th dose independent rect. 7 10
962 381.73 wind 9 14400 < th dose independent sin 4 NA
980 381.76 humidity 90 4320 > th dose dependent rect. 21 5
997 381.80 humidity 90 4320 > th dose independent rect. 1 1