Os12g0605300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tesmin/TSO1-like, CXC domain containing protein.
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Os12g0605300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tesmin/TSO1-like, CXC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.46 | 0.179 | 11.2 | 0.765 | 0.0945 | -0.288 | 0.518 | 2.06 | 0.0972 | 1.26 | 25 | 44 | -- | -- |
| 15.91 | 0.187 | 11.2 | 0.521 | 0.108 | -0.137 | 0.265 | -- | 0.0331 | 0.907 | 25 | 44 | -- | -- |
| 15.44 | 0.183 | 11.2 | 0.733 | 0.0837 | -0.313 | -- | 1.86 | 0.0886 | 0.5 | 25.2 | 45 | -- | -- |
| 16.2 | 0.189 | 11.2 | 0.513 | 0.105 | -0.147 | -- | -- | 0.0323 | 1.2 | 25 | 44 | -- | -- |
| 15.76 | 0.185 | 11.2 | 0.709 | -- | -0.352 | -- | 1.59 | 0.0864 | -- | 25.09 | 42 | -- | -- |
| 16.19 | 0.189 | 11.2 | 0.501 | 0.157 | -- | 0.294 | -- | 0.0223 | 1.55 | -- | -- | -- | -- |
| 16.53 | 0.19 | 11.2 | 0.491 | 0.158 | -- | -- | -- | 0.0205 | 1.77 | -- | -- | -- | -- |
| 16.65 | 0.19 | 11.2 | 0.531 | -- | -0.236 | -- | -- | 0.0526 | -- | 24.2 | 4 | -- | -- |
| 22.87 | 0.224 | 11.2 | -- | 0.16 | -0.0207 | -- | -- | -0.0329 | 1.81 | 25 | 44 | -- | -- |
| 18.05 | 0.199 | 11.2 | 0.497 | -- | -- | -- | -- | 0.024 | -- | -- | -- | -- | -- |
| 22.88 | 0.224 | 11.2 | -- | 0.167 | -- | -- | -- | -0.0342 | 1.86 | -- | -- | -- | -- |
| 23.92 | 0.229 | 11.2 | -- | -- | -0.165 | -- | -- | -0.0194 | -- | 24.6 | 3 | -- | -- |
| 24.58 | 0.231 | 11.2 | -- | -- | -- | -- | -- | -0.0311 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.00 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 4 |
| 7 | 13.22 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 4 |
| 8 | 13.23 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 4 |
| 12 | 13.26 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 13 | 13.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 33 | 13.35 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 47 | 13.39 | temperature | 25 | 720 | < th | dose dependent | rect. | 2 | 11 |
| 131 | 13.54 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 172 | 13.59 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 198 | 13.63 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 217 | 13.65 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 18 |
| 235 | 13.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 245 | 13.69 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 248 | 13.70 | temperature | 20 | 720 | < th | dose independent | sin | 4 | NA |
| 257 | 13.70 | temperature | 15 | 270 | > th | dose dependent | rect. | 4 | 15 |
| 268 | 13.72 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 465 | 13.93 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 7 |
| 522 | 13.98 | temperature | 25 | 270 | < th | dose independent | rect. | 9 | 4 |
| 660 | 14.08 | temperature | 30 | 270 | < th | dose dependent | sin | 0 | NA |
| 875 | 14.21 | temperature | 10 | 270 | > th | dose dependent | sin | 1 | NA |
| 940 | 14.25 | temperature | 25 | 90 | > th | dose independent | rect. | 5 | 14 |