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Os12g0604800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.2 (0.0182) R2 : 0.514
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.04 (0.0474) R2dC : 0.516 R2C : 0.513
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0297 (0.0382) R2dN8 : 0.000834 R2N8 : -0.00155
σ : 0.343
deviance : 53.64
__
_____
C
peak time of C : 18.9
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
49.29 0.33 10.2 -0.0253 1.09 0.47 0.465 0.82 -0.0323 19.7 8.17 10 -- --
50.32 0.333 10.2 -0.0025 1.09 0.453 0.193 -- -0.03 19.6 8.17 10 -- --
49.8 0.329 10.2 -0.0295 1.09 0.441 -- 0.631 -0.0297 19.6 9.11 10 -- --
50.43 0.333 10.2 -0.00717 1.09 0.452 -- -- -0.0297 19.6 8.17 10 -- --
108.71 0.486 10.2 -0.043 -- 0.187 -- 0.704 -0.0503 -- 26.98 19 -- --
53.56 0.343 10.2 0.00442 1.04 -- 0.18 -- -0.0301 18.9 -- -- -- --
53.64 0.343 10.2 0.00124 1.04 -- -- -- -0.0296 18.9 -- -- -- --
81.36 0.42 10.1 0.082 -- 0.837 -- -- 0.0129 -- -33.23 772 -- --
50.43 0.333 10.2 -- 1.09 0.451 -- -- -0.0289 19.6 8.17 10 -- --
110.19 0.49 10.2 -0.021 -- -- -- -- -0.0494 -- -- -- -- --
53.64 0.343 10.2 -- 1.04 -- -- -- -0.0297 18.9 -- -- -- --
77.79 0.411 10.2 -- -- 0.941 -- -- -0.137 -- -2.077 794 -- --
110.2 0.49 10.2 -- -- -- -- -- -0.047 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.92 wind 5.0 270 < th dose independent rect. 3 3
2 40.34 wind 9.0 270 < th dose independent rect. 6 21
3 40.39 precipitation 0.1 270 < th dose independent rect. 3 3
4 40.39 precipitation 0.1 270 < th dose dependent rect. 3 3
5 40.54 wind 5.0 90 < th dose independent rect. 3 5
10 40.73 wind 9.0 10 < th dose independent rect. 9 19
13 40.79 temperature 10.0 270 > th dose independent rect. 3 3
15 40.79 temperature 30.0 270 < th dose independent rect. 3 3
16 40.79 humidity 50.0 270 > th dose independent rect. 3 3
19 40.79 atmosphere 995.0 270 > th dose independent rect. 3 3
20 40.79 atmosphere 1015.0 270 < th dose independent rect. 3 3
21 40.79 radiation 20.0 270 < th dose independent rect. 3 3
24 40.79 temperature 10.0 270 > th dose independent rect. 6 21
26 40.87 radiation 40.0 270 < th dose dependent rect. 3 3
36 41.02 wind 9.0 270 < th dose dependent rect. 3 3
37 41.03 precipitation 0.1 30 < th dose independent rect. 4 5
38 41.03 precipitation 0.1 30 < th dose dependent rect. 4 5
42 41.06 temperature 10.0 30 > th dose independent rect. 4 5
44 41.06 temperature 30.0 30 < th dose independent rect. 4 5
45 41.06 humidity 50.0 30 > th dose independent rect. 4 5
47 41.06 atmosphere 995.0 30 > th dose independent rect. 4 5
48 41.06 atmosphere 1015.0 30 < th dose independent rect. 4 5
50 41.06 temperature 10.0 30 > th dose independent rect. 9 19
59 41.12 wind 9.0 30 < th dose dependent rect. 4 5
70 41.15 wind 9.0 90 < th dose dependent rect. 8 20
74 41.18 temperature 10.0 10 > th dose dependent rect. 9 19
79 41.22 precipitation 0.1 270 < th dose independent rect. 6 21
80 41.22 precipitation 0.1 270 < th dose dependent rect. 6 21
81 41.23 precipitation 0.1 30 < th dose independent rect. 9 19
82 41.23 precipitation 0.1 30 < th dose dependent rect. 9 19
98 41.32 radiation 40.0 30 < th dose independent rect. 4 5
99 41.32 atmosphere 995.0 30 > th dose independent rect. 9 19
100 41.35 radiation 1.0 270 < th dose dependent rect. 4 1
109 41.41 wind 9.0 270 < th dose dependent rect. 4 1
116 41.47 temperature 10.0 270 > th dose independent rect. 4 1
118 41.47 temperature 30.0 270 < th dose independent rect. 4 1
119 41.47 humidity 50.0 270 > th dose independent rect. 4 1
122 41.47 atmosphere 995.0 270 > th dose independent rect. 4 1
123 41.47 atmosphere 1010.0 270 < th dose independent rect. 4 1
125 41.47 radiation 20.0 270 < th dose independent rect. 4 1
128 41.47 temperature 10.0 270 > th dose independent rect. 5 23
145 41.48 atmosphere 1000.0 90 > th dose dependent rect. 3 5
146 41.49 radiation 40.0 270 < th dose dependent rect. 4 1
156 41.53 radiation 1.0 270 < th dose dependent rect. 3 8
158 41.54 humidity 50.0 270 > th dose dependent rect. 3 3
160 41.55 atmosphere 995.0 10 > th dose dependent rect. 4 5
186 41.62 radiation 1.0 270 < th dose independent rect. 3 8
209 41.79 temperature 15.0 90 > th dose independent rect. 8 7
218 41.83 atmosphere 1000.0 270 > th dose dependent rect. 4 1
228 41.86 humidity 50.0 270 > th dose dependent rect. 4 1
231 41.89 wind 9.0 270 < th dose dependent rect. 6 21
257 41.98 radiation 40.0 270 < th dose dependent rect. 2 5
271 42.06 temperature 10.0 30 > th dose dependent rect. 4 5
272 42.07 humidity 50.0 30 > th dose independent rect. 9 19
279 42.11 wind 9.0 90 < th dose independent rect. 8 7
291 42.16 wind 9.0 270 < th dose dependent rect. 7 6
304 42.21 temperature 30.0 270 < th dose dependent rect. 3 2
306 42.22 temperature 10.0 270 > th dose dependent rect. 3 3
316 42.25 precipitation 0.1 90 < th dose independent rect. 8 7
317 42.25 precipitation 0.1 90 < th dose dependent rect. 8 7
350 42.36 atmosphere 1015.0 90 < th dose independent rect. 8 7
351 42.36 temperature 10.0 90 > th dose independent rect. 15 17
362 42.37 atmosphere 995.0 90 > th dose independent rect. 8 7
364 42.37 atmosphere 995.0 270 > th dose independent rect. 6 21
388 42.48 wind 1.0 270 > th dose independent rect. 3 3
411 42.51 precipitation 0.1 90 < th dose independent rect. 15 17
414 42.51 precipitation 0.1 90 < th dose dependent rect. 15 17
417 42.52 humidity 50.0 270 > th dose independent rect. 6 21
419 42.52 temperature 10.0 90 > th dose dependent rect. 8 7
427 42.54 radiation 40.0 90 < th dose independent rect. 15 17
432 42.55 humidity 50.0 90 > th dose independent rect. 8 7
449 42.59 wind 1.0 270 > th dose independent rect. 2 5
451 42.59 humidity 90.0 90 < th dose independent rect. 8 7
452 42.59 wind 9.0 90 < th dose independent rect. 15 17
477 42.67 temperature 10.0 10 > th dose dependent rect. 9 6
478 42.68 atmosphere 1015.0 30 < th dose independent rect. 9 19
481 42.70 precipitation 0.1 270 < th dose independent rect. 3 14
482 42.70 precipitation 0.1 270 < th dose dependent rect. 3 14
496 42.74 wind 9.0 10 < th dose independent rect. 9 6
501 42.75 humidity 50.0 270 > th dose dependent rect. 2 5
522 42.79 temperature 10.0 1440 > th dose independent rect. 5 5
525 42.79 atmosphere 995.0 1440 > th dose independent rect. 5 5
526 42.79 atmosphere 1015.0 1440 < th dose independent rect. 5 5
527 42.79 temperature 10.0 1440 > th dose independent rect. 10 19
543 42.81 radiation 1.0 90 > th dose independent rect. 8 7
590 42.89 wind 9.0 270 < th dose dependent rect. 9 1
592 42.91 temperature 10.0 270 > th dose dependent rect. 4 1
595 42.93 wind 9.0 270 < th dose independent rect. 17 10
599 42.94 temperature 10.0 10 > th dose independent rect. 9 6
601 42.94 atmosphere 995.0 10 > th dose independent rect. 9 6
602 42.94 atmosphere 1015.0 10 < th dose independent rect. 9 6
603 42.94 precipitation 0.1 10 < th dose independent rect. 9 6
604 42.94 temperature 10.0 10 > th dose independent rect. 15 18
606 42.94 precipitation 0.1 10 < th dose dependent rect. 9 6
608 42.96 temperature 10.0 270 > th dose dependent rect. 9 1
620 42.97 humidity 90.0 10 < th dose independent rect. 9 6
623 42.98 atmosphere 1005.0 270 > th dose independent rect. 3 3
637 43.02 radiation 10.0 270 < th dose independent rect. 17 10
650 43.03 atmosphere 995.0 90 > th dose independent rect. 15 17
652 43.03 humidity 50.0 30 > th dose dependent rect. 4 5
653 43.03 radiation 40.0 270 < th dose dependent rect. 17 10
658 43.04 temperature 10.0 270 > th dose independent rect. 17 10
662 43.04 temperature 10.0 270 > th dose independent rect. 3 14
663 43.04 atmosphere 1015.0 270 < th dose independent rect. 3 14
666 43.05 radiation 1.0 10 > th dose independent rect. 5 4
669 43.05 radiation 1.0 10 > th dose independent rect. 9 6
741 43.16 temperature 10.0 1440 > th dose independent rect. 10 6
744 43.16 wind 9.0 10 < th dose independent rect. 15 18
745 43.16 temperature 10.0 1440 > th dose independent rect. 16 18
764 43.20 precipitation 0.1 10 < th dose independent rect. 15 18
768 43.20 precipitation 0.1 10 < th dose dependent rect. 15 18
783 43.24 temperature 15.0 270 > th dose independent rect. 9 1
795 43.25 radiation 1.0 270 > th dose independent rect. 9 1
798 43.25 temperature 15.0 270 > th dose independent rect. 6 8
807 43.27 wind 9.0 270 < th dose dependent rect. 8 3
826 43.31 precipitation 0.1 270 < th dose independent rect. 17 10
831 43.31 precipitation 0.1 270 < th dose dependent rect. 17 10
835 43.33 atmosphere 1005.0 270 > th dose independent rect. 4 1
843 43.34 humidity 50.0 270 > th dose independent rect. 17 10
844 43.34 radiation 40.0 10 < th dose independent rect. 15 18
884 43.39 humidity 50.0 270 > th dose independent rect. 6 8
900 43.41 wind 7.0 270 < th dose independent rect. 6 8
901 43.41 humidity 50.0 90 > th dose independent rect. 15 17
921 43.47 wind 1.0 10 > th dose independent rect. 9 6
943 43.49 atmosphere 1015.0 90 < th dose independent rect. 15 17
982 43.56 wind 7.0 270 < th dose independent rect. 9 1
992 43.58 wind 1.0 90 > th dose independent rect. 8 7
993 43.58 atmosphere 995.0 270 > th dose independent rect. 17 10
994 43.58 atmosphere 995.0 10 > th dose independent rect. 15 18