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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0604700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to LSTK-1-like kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.04 (0.0391) R2 : 0.638
β1 : 0.901 (0.147) R2dD : 0.0336 R2D : 0.0239
β2 : 1.52 (0.102) R2dC : 0.19 R2C : 0.223
β3 : 1.9 (0.111) R2dE : 0.255 R2E : 0.306
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.829 (0.0835) R2dN8 : 0.112 R2N8 : 0.0596
σ : 0.731
deviance : 246.67
__
_____
C
peak time of C : 4.78
E
wheather : temperature
threshold : 26.9
memory length : 1277
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
239.7 0.727 5.19 -0.773 1.6 2.9 1.41 -10 1.11 4.83 29.46 1256 -- --
246.25 0.731 5.15 0.812 1.51 2.19 1.87 -- 0.49 4.85 23.87 1266 -- --
242.7 0.726 5.2 -0.602 1.6 2.73 -- -7.92 0.866 4.87 28.5 1246 -- --
246.67 0.731 5.04 0.901 1.52 1.9 -- -- 0.829 4.78 26.9 1277 -- --
371.17 0.897 5.1 0.835 -- 2.23 -- -0.198 0.668 -- 25.43 1276 -- --
395.86 0.933 5.05 1.52 1.77 -- 1.67 -- 0.863 4.34 -- -- -- --
403.5 0.941 5.06 1.51 1.78 -- -- -- 0.854 4.31 -- -- -- --
368.39 0.894 5.16 0.777 -- 2.38 -- -- 0.553 -- 24.34 1265 -- --
266.41 0.76 5.1 -- 1.55 2.11 -- -- 0.65 4.83 26.15 1284 -- --
573.54 1.12 5.07 1.58 -- -- -- -- 0.901 -- -- -- -- --
463.38 1.01 5.09 -- 1.81 -- -- -- 0.686 4.29 -- -- -- --
383.47 0.912 5.18 -- -- 2.57 -- -- 0.404 -- 24 1266 -- --
639.22 1.18 5.11 -- -- -- -- -- 0.726 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 227.08 temperature 30 720 > th dose dependent rect. 18 1
16 232.74 radiation 20 1440 < th dose dependent rect. 18 9
32 233.94 humidity 70 720 < th dose independent rect. 19 12
34 234.48 humidity 70 720 < th dose independent rect. 19 1
49 236.86 humidity 50 1440 < th dose independent rect. 16 1
51 237.36 humidity 70 720 < th dose dependent rect. 19 12
53 237.65 humidity 70 720 < th dose dependent rect. 19 1
64 237.83 humidity 50 1440 < th dose dependent rect. 16 1
84 240.01 humidity 70 720 > th dose independent rect. 19 8
131 243.58 wind 3 90 < th dose dependent rect. 3 2
132 243.61 wind 3 10 < th dose dependent rect. 3 4
146 244.15 temperature 25 1440 > th dose dependent sin 11 NA
175 245.03 temperature 30 1440 > th dose dependent rect. 13 6
189 245.11 radiation 30 14400 > th dose independent rect. 16 16
198 245.30 temperature 30 1440 > th dose dependent sin 16 NA
228 245.65 wind 5 43200 > th dose dependent rect. 24 15
250 245.77 radiation 1 1440 < th dose dependent rect. 18 2
256 245.89 wind 5 43200 > th dose dependent rect. 2 13
260 245.93 radiation 1 1440 < th dose independent rect. 18 9
309 246.13 radiation 30 14400 > th dose independent rect. 16 1
359 246.54 temperature 30 720 > th dose independent rect. 18 1
375 246.59 radiation 1 720 > th dose independent rect. 18 11
378 246.63 temperature 30 1440 > th dose dependent no NA NA
477 246.77 temperature 20 90 > th dose dependent rect. 3 3
485 246.84 temperature 30 1440 > th dose independent sin 13 NA
490 246.93 temperature 30 1440 < th dose independent sin 12 NA
539 247.58 humidity 50 1440 > th dose independent rect. 16 1
566 247.82 wind 7 43200 < th dose independent rect. 3 11
601 248.14 temperature 30 1440 < th dose independent rect. 9 19
604 248.19 temperature 30 1440 < th dose independent rect. 9 16
617 248.26 temperature 30 1440 < th dose independent rect. 9 13
619 248.27 temperature 30 1440 < th dose independent rect. 9 11
631 248.34 wind 7 43200 < th dose independent rect. 21 18
660 248.45 wind 7 43200 > th dose independent rect. 2 12
670 248.55 radiation 1 1440 < th dose independent rect. 18 2
686 248.72 temperature 30 1440 < th dose independent rect. 17 22
700 248.77 temperature 30 1440 > th dose independent rect. 9 10
731 248.97 wind 7 43200 > th dose independent rect. 21 18
734 248.99 temperature 30 1440 < th dose independent rect. 15 21
750 249.13 temperature 30 1440 < th dose independent rect. 13 23
752 249.14 radiation 1 1440 > th dose independent rect. 18 1
767 249.17 temperature 30 1440 < th dose independent rect. 15 23
823 249.38 temperature 30 1440 > th dose independent rect. 15 4
852 249.41 temperature 20 1440 > th dose dependent rect. 6 2
856 249.42 temperature 30 1440 < th dose independent rect. 23 23
857 249.43 temperature 30 1440 < th dose independent rect. 23 21
863 249.44 temperature 30 1440 < th dose independent rect. 21 23
871 249.46 temperature 30 1440 < th dose independent no NA NA
873 249.46 temperature 30 1440 < th dose independent rect. 2 23
904 249.52 temperature 30 1440 < th dose independent rect. 2 20
907 249.52 radiation 1 1440 > th dose dependent rect. 17 13
909 249.53 temperature 30 1440 < th dose independent rect. 2 18
944 249.72 temperature 30 1440 > th dose independent rect. 17 23
957 249.80 temperature 30 1440 > th dose independent rect. 14 22
995 250.00 wind 7 43200 < th dose independent sin 5 NA
996 250.00 temperature 30 1440 < th dose independent rect. 15 13
997 250.00 radiation 40 14400 > th dose dependent rect. 15 1