FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0604000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.98 (0.0303) R2 : 0.00086
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0399 (0.0637) R2dN8 : 0.00111 R2N8 : 0.00086
σ : 0.57
deviance : 149.1
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
142.2 0.555 2.98 -0.0694 0.208 -0.0926 0.927 -0.976 0.0346 15 25 10 -- --
144.93 0.565 2.96 0.255 0.174 -0.165 0.36 -- 0.116 14.7 22.46 18 -- --
144.39 0.56 2.98 0.0358 0.192 -0.0673 -- -0.665 0.0489 15.5 25.21 6 -- --
143.52 0.562 2.96 0.265 0.333 -0.238 -- -- 0.139 15.2 25.74 21 -- --
145.88 0.563 2.99 0.025 -- 0.00908 -- -0.682 0.0206 -- 25.3 6 -- --
146.6 0.568 2.97 0.198 0.131 -- 0.385 -- 0.0633 15.4 -- -- -- --
147.06 0.568 2.97 0.205 0.134 -- -- -- 0.0656 15.7 -- -- -- --
147.21 0.568 2.96 0.24 -- -0.11 -- -- 0.0988 -- 22.6 34 -- --
145.32 0.565 2.96 -- 0.305 -0.21 -- -- 0.101 15.2 25.74 21 -- --
148.06 0.569 2.97 0.199 -- -- -- -- 0.062 -- -- -- -- --
148.16 0.569 2.98 -- 0.13 -- -- -- 0.0428 15.7 -- -- -- --
148.57 0.57 2.97 -- -- -0.0708 -- -- 0.0584 -- 25.74 21 -- --
149.1 0.57 2.98 -- -- -- -- -- 0.0399 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 130.01 radiation 10.0 10 > th dose independent rect. 6 1
27 130.01 radiation 10.0 10 > th dose dependent rect. 6 1
55 133.83 temperature 20.0 10 < th dose independent rect. 6 2
57 134.09 temperature 20.0 10 < th dose independent rect. 6 11
59 134.15 temperature 20.0 10 < th dose independent rect. 6 7
69 134.64 temperature 20.0 30 < th dose dependent rect. 6 11
87 134.87 temperature 20.0 30 < th dose dependent rect. 6 6
106 135.07 temperature 20.0 30 < th dose dependent rect. 6 3
140 135.35 wind 5.0 10 > th dose independent rect. 8 1
146 135.35 wind 5.0 10 > th dose dependent rect. 8 1
193 135.91 atmosphere 1005.0 30 > th dose dependent rect. 6 1
214 136.68 wind 3.0 30 < th dose dependent rect. 6 1
249 138.60 wind 3.0 90 > th dose dependent rect. 6 1
251 138.70 temperature 25.0 10 > th dose independent rect. 6 1
257 138.79 wind 9.0 1440 < th dose independent rect. 7 1
258 138.79 temperature 10.0 1440 > th dose independent rect. 7 1
262 138.79 temperature 30.0 1440 < th dose independent rect. 7 1
266 138.79 humidity 50.0 1440 > th dose independent rect. 7 1
271 138.79 atmosphere 995.0 1440 > th dose independent rect. 7 1
272 138.79 atmosphere 1015.0 1440 < th dose independent rect. 7 1
274 138.79 temperature 10.0 1440 > th dose independent rect. 8 23
277 138.82 humidity 90.0 30 < th dose independent rect. 6 1
279 138.82 temperature 30.0 30 < th dose dependent rect. 6 1
282 138.90 humidity 80.0 90 < th dose dependent rect. 6 1
284 138.91 temperature 25.0 270 < th dose independent rect. 11 4
285 138.93 wind 3.0 30 < th dose independent rect. 6 1
292 138.99 humidity 80.0 30 > th dose dependent rect. 6 1
304 139.14 temperature 25.0 10 > th dose independent rect. 9 6
322 139.34 temperature 25.0 90 > th dose independent rect. 9 6
329 139.46 atmosphere 1005.0 30 > th dose independent rect. 6 1
340 139.56 temperature 25.0 10 > th dose independent rect. 24 15
345 139.58 temperature 25.0 270 < th dose independent rect. 2 14
347 139.60 wind 9.0 30 < th dose independent rect. 7 23
356 139.65 temperature 25.0 10 > th dose independent sin 3 NA
360 139.67 temperature 25.0 10 > th dose independent rect. 2 13
364 139.68 temperature 20.0 90 < th dose independent sin 0 NA
372 139.71 atmosphere 1010.0 10 < th dose independent rect. 18 21
376 139.74 humidity 80.0 30 > th dose independent rect. 6 1
381 139.75 temperature 10.0 30 > th dose independent rect. 6 1
383 139.75 temperature 30.0 30 < th dose independent rect. 6 1
384 139.75 humidity 50.0 30 > th dose independent rect. 6 1
388 139.75 atmosphere 1015.0 30 < th dose independent rect. 6 1
389 139.75 radiation 20.0 30 < th dose independent rect. 6 1
392 139.75 precipitation 0.1 30 < th dose independent rect. 6 1
393 139.75 temperature 25.0 90 > th dose independent rect. 3 12
394 139.75 temperature 10.0 30 > th dose independent rect. 7 23
395 139.75 precipitation 0.1 30 < th dose dependent rect. 6 1
400 139.78 wind 1.0 30 > th dose independent rect. 6 1
410 139.85 atmosphere 1010.0 10 < th dose independent sin 7 NA
418 139.88 atmosphere 1005.0 10 > th dose dependent rect. 5 4
421 139.91 temperature 25.0 90 < th dose dependent sin 1 NA
429 139.99 temperature 20.0 30 > th dose independent sin 0 NA
432 140.00 radiation 20.0 10 < th dose independent rect. 13 20
438 140.05 temperature 25.0 90 < th dose independent rect. 23 18
442 140.06 temperature 10.0 30 > th dose dependent rect. 6 1
457 140.12 temperature 25.0 10 > th dose independent rect. 7 8
468 140.14 temperature 25.0 270 < th dose dependent rect. 11 4
488 140.22 temperature 25.0 10 > th dose independent rect. 5 7
491 140.25 temperature 25.0 270 < th dose dependent rect. 10 6
506 140.30 temperature 25.0 10 > th dose independent rect. 23 19
513 140.33 temperature 30.0 10 < th dose dependent sin 3 NA
552 140.45 temperature 25.0 10 > th dose independent rect. 5 13
587 140.50 temperature 25.0 10 > th dose independent rect. 2 16
603 140.53 atmosphere 1005.0 10 > th dose dependent rect. 2 7
608 140.55 radiation 40.0 30 < th dose dependent rect. 6 1
623 140.59 temperature 20.0 10 > th dose dependent sin 4 NA
624 140.59 temperature 20.0 10 > th dose dependent rect. 2 13
652 140.66 temperature 20.0 10 < th dose independent rect. 4 5
656 140.67 temperature 25.0 10 < th dose independent rect. 11 7
672 140.69 temperature 25.0 10 > th dose independent rect. 20 19
673 140.69 atmosphere 1015.0 30 < th dose independent rect. 7 23
679 140.70 atmosphere 995.0 30 > th dose independent rect. 7 23
680 140.70 precipitation 0.1 30 < th dose independent rect. 7 23
682 140.70 temperature 20.0 10 > th dose dependent rect. 23 16
683 140.70 precipitation 0.1 30 < th dose dependent rect. 7 23
691 140.71 temperature 20.0 10 > th dose dependent rect. 20 19
706 140.73 temperature 30.0 270 < th dose dependent rect. 23 17
756 140.81 temperature 15.0 30 > th dose dependent rect. 9 6
782 140.85 temperature 25.0 10 < th dose dependent rect. 14 2
869 140.99 temperature 25.0 10 < th dose independent rect. 14 2
880 141.00 radiation 10.0 10 < th dose dependent rect. 6 1
901 141.03 temperature 25.0 10 > th dose independent rect. 20 22
915 141.06 humidity 90.0 10 < th dose independent rect. 9 6
945 141.10 temperature 25.0 10 < th dose dependent rect. 16 1
966 141.12 temperature 25.0 10 < th dose dependent rect. 12 5
973 141.13 temperature 25.0 10 < th dose independent rect. 24 17
975 141.13 atmosphere 1005.0 270 > th dose dependent rect. 2 5
1000 141.19 temperature 10.0 10 > th dose dependent sin 4 NA