Os12g0603700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0603700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 444.43 | 0.991 | 8.94 | 0.732 | 4.07 | -2.23 | -7.73 | -3.14 | -0.807 | 10.5 | 1011 | 14436 | -- | -- |
| 456.25 | 0.995 | 8.9 | 1.15 | 4.1 | -2.53 | -7.79 | -- | -0.749 | 10.5 | 1011 | 14560 | -- | -- |
| 687.67 | 1.22 | 8.95 | 0.33 | 4.12 | -2.07 | -- | -3.47 | -0.823 | 10.4 | 1011 | 14464 | -- | -- |
| 702.08 | 1.23 | 8.9 | 0.906 | 4.08 | -2.39 | -- | -- | -0.747 | 10.4 | 1011 | 14242 | -- | -- |
| 1716.26 | 1.93 | 9.05 | 0.16 | -- | -2.07 | -- | -3.92 | -0.804 | -- | 1024 | 15201 | -- | -- |
| 572.54 | 1.12 | 8.89 | 0.686 | 4.06 | -- | -7.6 | -- | -0.743 | 10.5 | -- | -- | -- | -- |
| 808.41 | 1.33 | 8.9 | 0.378 | 4.11 | -- | -- | -- | -0.767 | 10.4 | -- | -- | -- | -- |
| 1736.03 | 1.94 | 9 | 0.796 | -- | -2.45 | -- | -- | -0.743 | -- | 1011 | 15149 | -- | -- |
| 720.93 | 1.25 | 8.92 | -- | 4.12 | -2.21 | -- | -- | -0.858 | 10.4 | 1010 | 14431 | -- | -- |
| 1840.03 | 2 | 9.01 | 0.311 | -- | -- | -- | -- | -0.78 | -- | -- | -- | -- | -- |
| 812.17 | 1.33 | 8.91 | -- | 4.11 | -- | -- | -- | -0.809 | 10.4 | -- | -- | -- | -- |
| 1750.9 | 1.95 | 9.06 | -- | -- | -2.22 | -- | -- | -0.857 | -- | 1011 | 16529 | -- | -- |
| 1842.57 | 2 | 9.02 | -- | -- | -- | -- | -- | -0.815 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 433.85 | wind | 5 | 14400 | > th | dose dependent | rect. | 15 | 4 |
| 4 | 434.73 | wind | 5 | 14400 | > th | dose dependent | rect. | 13 | 8 |
| 17 | 437.49 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 20 | 437.82 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 27 | 438.55 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 35 | 439.20 | wind | 7 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 62 | 440.88 | wind | 5 | 14400 | > th | dose dependent | sin | 17 | NA |
| 125 | 443.92 | wind | 5 | 14400 | > th | dose independent | rect. | 13 | 18 |
| 129 | 444.09 | wind | 5 | 14400 | < th | dose independent | rect. | 13 | 18 |
| 139 | 444.31 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 154 | 444.78 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 22 | 3 |
| 158 | 444.90 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 162 | 444.98 | wind | 5 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 178 | 445.14 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 22 | 7 |
| 182 | 445.19 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 20 | 9 |
| 229 | 445.53 | atmosphere | 1010 | 14400 | < th | dose dependent | sin | 11 | NA |
| 232 | 445.54 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 14 | 15 |
| 244 | 445.58 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 19 | 14 |
| 258 | 445.61 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 14 | 19 |
| 280 | 445.66 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 8 | 21 |
| 281 | 445.67 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 19 | 17 |
| 282 | 445.67 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 11 | 18 |
| 286 | 445.67 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 19 | 21 |
| 331 | 445.73 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 367 | 445.78 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 22 | 19 |
| 373 | 445.78 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 3 | 23 |
| 375 | 445.78 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 22 | 23 |
| 377 | 445.79 | atmosphere | 1010 | 14400 | < th | dose dependent | no | NA | NA |
| 684 | 446.31 | wind | 5 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 708 | 446.35 | wind | 7 | 14400 | > th | dose independent | sin | 17 | NA |
| 762 | 446.45 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 11 | NA |
| 787 | 446.48 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 20 | 16 |
| 815 | 446.53 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 20 | 19 |
| 825 | 446.55 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 7 | 10 |
| 897 | 446.61 | atmosphere | 1010 | 14400 | < th | dose dependent | rect. | 11 | 1 |