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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0599700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0179) R2 : 0.00583
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0617 (0.0377) R2dN8 : 0.00753 R2N8 : 0.00583
σ : 0.337
deviance : 52.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
29.96 0.257 3.19 -0.168 0.0947 24.8 -0.227 -53.6 0.0877 7.32 1.002 10 23 1
41.48 0.302 3.07 0.101 0.0954 1.79 -0.199 -- 0.0856 7.06 1.002 10 23 1
30.09 0.255 3.19 -0.169 0.096 24.8 -- -53.6 0.091 7.2 1.004 10 23 1
41.58 0.302 3.07 0.0969 0.095 1.8 -- -- 0.0861 7.17 1.004 10 23 1
30.56 0.257 3.19 -0.171 -- 24.7 -- -53.4 0.0875 -- 1.007 10 23 1.02
50.77 0.334 3.07 0.185 0.0623 -- -0.375 -- 0.0801 8.05 -- -- -- --
50.99 0.334 3.07 0.172 0.0891 -- -- -- 0.0789 5.35 -- -- -- --
42.05 0.303 3.07 0.0991 -- 1.79 -- -- 0.0879 -- 1.153 2 23.3 1.79
41.83 0.303 3.07 -- 0.0963 1.84 -- -- 0.0757 7.14 1.03 2 23.6 2.42
51.4 0.335 3.07 0.175 -- -- -- -- 0.0812 -- -- -- -- --
51.77 0.337 3.07 -- 0.0921 -- -- -- 0.0597 5.28 -- -- -- --
42.3 0.304 3.07 -- -- 1.83 -- -- 0.0773 -- 1.153 2 23.3 1.79
52.22 0.337 3.07 -- -- -- -- -- 0.0617 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.96 wind 1.0 10 < th dose independent rect. 23 1
5 29.96 wind 1.0 10 < th dose dependent rect. 23 1
9 30.25 precipitation 0.1 30 > th dose independent rect. 23 1
13 30.25 precipitation 0.1 30 > th dose dependent rect. 23 1
31 35.54 wind 1.0 90 < th dose dependent rect. 22 1
36 35.91 wind 1.0 10 < th dose independent rect. 15 10
37 35.96 wind 1.0 10 < th dose independent rect. 17 8
53 38.04 wind 1.0 10 < th dose dependent rect. 14 11
55 38.06 wind 1.0 10 < th dose dependent rect. 17 8
75 40.44 precipitation 0.1 270 > th dose independent rect. 20 1
76 40.44 precipitation 0.1 270 > th dose dependent rect. 20 1
80 41.48 wind 1.0 90 < th dose independent rect. 22 1
160 44.95 wind 1.0 90 < th dose independent rect. 15 9
205 45.55 wind 1.0 10 < th dose independent rect. 8 19
227 45.69 wind 1.0 10 > th dose independent sin 16 NA
287 46.32 wind 1.0 10 < th dose independent sin 16 NA
289 46.33 wind 1.0 10 < th dose dependent rect. 8 17
291 46.34 wind 1.0 720 < th dose dependent rect. 13 2
294 46.37 wind 1.0 720 < th dose independent rect. 13 1
309 46.42 wind 1.0 90 < th dose dependent sin 17 NA
312 46.43 wind 1.0 720 < th dose dependent rect. 12 12
321 46.54 wind 1.0 90 < th dose independent rect. 9 15
322 46.55 wind 1.0 720 < th dose independent rect. 12 12
324 46.55 wind 1.0 90 < th dose independent rect. 8 19
345 46.63 wind 1.0 90 < th dose independent sin 16 NA
377 46.80 humidity 90.0 10 > th dose dependent rect. 23 1
413 46.95 wind 1.0 720 > th dose independent rect. 9 6
439 47.05 wind 1.0 90 > th dose independent sin 16 NA
449 47.08 precipitation 0.1 1440 > th dose independent rect. 23 1
450 47.08 precipitation 0.1 1440 > th dose dependent rect. 23 1
542 47.43 wind 1.0 10 > th dose independent rect. 14 14
552 47.45 wind 1.0 30 < th dose independent rect. 2 1
577 47.50 wind 1.0 10 < th dose dependent sin 18 NA
578 47.50 wind 3.0 30 < th dose dependent rect. 2 1
605 47.55 atmosphere 1005.0 30 > th dose dependent rect. 2 1
622 47.58 temperature 25.0 30 < th dose independent rect. 2 1
629 47.58 temperature 15.0 30 > th dose dependent rect. 2 1
631 47.59 humidity 80.0 30 > th dose independent rect. 2 1
650 47.62 temperature 10.0 30 > th dose independent rect. 2 1
653 47.62 humidity 50.0 30 > th dose independent rect. 2 1
656 47.62 atmosphere 995.0 30 > th dose independent rect. 2 1
657 47.62 atmosphere 1010.0 30 < th dose independent rect. 2 1
659 47.62 radiation 1.0 30 < th dose independent rect. 2 1
664 47.62 precipitation 0.1 30 < th dose independent rect. 2 1
666 47.62 temperature 10.0 30 > th dose independent rect. 3 23
668 47.62 humidity 50.0 30 > th dose dependent rect. 2 1
671 47.62 radiation 1.0 30 < th dose dependent rect. 2 1
676 47.62 precipitation 0.1 30 < th dose dependent rect. 2 1
682 47.63 atmosphere 1015.0 30 < th dose independent rect. 3 23
689 47.64 atmosphere 1015.0 30 < th dose dependent rect. 2 1
691 47.65 atmosphere 1005.0 30 > th dose independent rect. 2 1
753 47.77 temperature 30.0 30 < th dose dependent rect. 2 1
755 47.78 atmosphere 1005.0 90 > th dose independent rect. 22 1
806 47.87 wind 1.0 10 > th dose independent rect. 18 13
858 47.97 wind 1.0 10 > th dose independent rect. 12 16
860 47.97 wind 9.0 30 < th dose independent rect. 3 23
881 48.01 atmosphere 1005.0 10 > th dose independent rect. 22 2
893 48.03 wind 1.0 10 > th dose independent rect. 18 10
925 48.09 atmosphere 1000.0 90 > th dose dependent rect. 22 1
930 48.11 wind 1.0 30 > th dose independent rect. 2 1
935 48.11 atmosphere 1000.0 10 > th dose dependent rect. 22 2
949 48.14 wind 1.0 90 < th dose independent rect. 22 12
950 48.14 atmosphere 1005.0 30 > th dose dependent rect. 22 5
986 48.16 wind 1.0 10 > th dose independent rect. 14 17