Os12g0599400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
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Os12g0599400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description :
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 209.67 | 0.68 | 3.05 | -0.21 | 0.0114 | 5.71 | -0.702 | -13.1 | 0.00505 | 13.3 | 48 | 580 | -- | -- |
| 226.48 | 0.706 | 2.99 | -0.0795 | 0.041 | -0.112 | 0.389 | -- | -0.0319 | 2.29 | 42.34 | 268 | -- | -- |
| 211.08 | 0.677 | 3.06 | -0.275 | 0.0978 | 6.81 | -- | -15.7 | -0.00211 | 7.15 | 47.25 | 572 | -- | -- |
| 223.76 | 0.701 | 2.99 | -0.0757 | 0.204 | -0.51 | -- | -- | -0.046 | 13.3 | 86.03 | 79 | -- | -- |
| 211.49 | 0.677 | 3.06 | -0.271 | -- | 6.75 | -- | -15.6 | -0.00379 | -- | 47.26 | 575 | -- | -- |
| 226.52 | 0.706 | 2.99 | -0.0835 | 0.0426 | -- | 0.402 | -- | -0.0314 | 2.22 | -- | -- | -- | -- |
| 227.01 | 0.706 | 2.99 | -0.0955 | 0.065 | -- | -- | -- | -0.0344 | 5.12 | -- | -- | -- | -- |
| 224.88 | 0.698 | 2.99 | -0.0818 | -- | -0.271 | -- | -- | -0.0373 | -- | 89 | 35 | -- | -- |
| 223.6 | 0.696 | 2.99 | -- | 0.224 | -0.51 | -- | -- | -0.028 | 13.7 | 89 | 19 | -- | -- |
| 227.23 | 0.704 | 2.99 | -0.0932 | -- | -- | -- | -- | -0.0327 | -- | -- | -- | -- | -- |
| 227.25 | 0.705 | 2.99 | -- | 0.0634 | -- | -- | -- | -0.0237 | 5.18 | -- | -- | -- | -- |
| 225.07 | 0.699 | 2.99 | -- | -- | -0.279 | -- | -- | -0.0277 | -- | 89 | 20 | -- | -- |
| 227.46 | 0.704 | 2.99 | -- | -- | -- | -- | -- | -0.0224 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 205.87 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 3 |
| 2 | 206.84 | humidity | 80 | 90 | > th | dose dependent | rect. | 12 | 1 |
| 3 | 206.88 | radiation | 1 | 90 | < th | dose independent | rect. | 10 | 5 |
| 4 | 206.88 | radiation | 1 | 90 | < th | dose dependent | rect. | 10 | 5 |
| 5 | 206.89 | radiation | 1 | 10 | < th | dose independent | rect. | 13 | 1 |
| 15 | 206.89 | radiation | 1 | 10 | < th | dose dependent | rect. | 13 | 1 |
| 35 | 207.34 | humidity | 80 | 90 | > th | dose independent | rect. | 12 | 1 |
| 40 | 208.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 44 | 208.20 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 1 |
| 47 | 208.26 | humidity | 50 | 1440 | < th | dose dependent | rect. | 14 | 2 |
| 57 | 208.50 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 2 |
| 64 | 208.59 | humidity | 50 | 4320 | > th | dose independent | rect. | 17 | 16 |
| 68 | 208.65 | humidity | 70 | 270 | < th | dose dependent | rect. | 18 | 2 |
| 86 | 208.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 19 | 13 |
| 121 | 208.89 | radiation | 20 | 10 | < th | dose independent | rect. | 14 | 1 |
| 135 | 208.97 | humidity | 50 | 4320 | < th | dose dependent | rect. | 17 | 17 |
| 137 | 208.99 | humidity | 50 | 4320 | < th | dose independent | rect. | 17 | 17 |
| 138 | 209.01 | humidity | 60 | 270 | < th | dose independent | rect. | 18 | 2 |
| 151 | 209.01 | humidity | 50 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 170 | 209.06 | humidity | 50 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 217 | 209.09 | humidity | 50 | 720 | < th | dose dependent | rect. | 17 | 17 |
| 237 | 209.12 | humidity | 50 | 720 | < th | dose independent | rect. | 17 | 17 |
| 330 | 209.28 | radiation | 30 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 469 | 209.85 | humidity | 60 | 30 | > th | dose dependent | rect. | 12 | 4 |
| 471 | 209.87 | wind | 1 | 10 | < th | dose independent | rect. | 8 | 1 |
| 473 | 209.87 | wind | 1 | 10 | < th | dose dependent | rect. | 8 | 1 |
| 603 | 210.84 | radiation | 20 | 90 | < th | dose dependent | rect. | 12 | 3 |
| 731 | 211.14 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 3 |
| 789 | 211.61 | wind | 1 | 270 | < th | dose independent | rect. | 20 | 2 |
| 848 | 212.08 | humidity | 50 | 720 | < th | dose independent | rect. | 12 | 1 |
| 856 | 212.23 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 17 |
| 858 | 212.25 | temperature | 25 | 90 | < th | dose independent | rect. | 12 | 4 |
| 885 | 212.50 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 4 |
| 985 | 213.08 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 17 |
| 1000 | 213.25 | humidity | 80 | 10 | > th | dose independent | rect. | 14 | 1 |