Os12g0597700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY2 (Fragment).
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Os12g0597700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.35 | 0.241 | 10.5 | -0.181 | 0.47 | -1.02 | -0.324 | 0.359 | 0.0654 | 0.184 | 20.15 | 2016 | -- | -- |
| 26.45 | 0.24 | 10.5 | -0.195 | 0.477 | -1.15 | -0.331 | -- | 0.0692 | 0.147 | 19.89 | 2021 | -- | -- |
| 26.76 | 0.241 | 10.5 | -0.181 | 0.466 | -0.983 | -- | 0.405 | 0.064 | 0.136 | 20.1 | 2077 | -- | -- |
| 26.85 | 0.241 | 10.5 | -0.163 | 0.47 | -1.13 | -- | -- | 0.0702 | 0.117 | 19.9 | 2082 | -- | -- |
| 39.3 | 0.292 | 10.5 | -0.22 | -- | -1.05 | -- | 0.144 | 0.0384 | -- | 20.24 | 2334 | -- | -- |
| 36.3 | 0.282 | 10.5 | 0.161 | 0.492 | -- | -0.325 | -- | 0.199 | 0.137 | -- | -- | -- | -- |
| 36.76 | 0.284 | 10.5 | 0.174 | 0.493 | -- | -- | -- | 0.201 | 0.0955 | -- | -- | -- | -- |
| 39.29 | 0.292 | 10.5 | -0.208 | -- | -1.11 | -- | -- | 0.0518 | -- | 20.01 | 2334 | -- | -- |
| 27.31 | 0.243 | 10.5 | -- | 0.471 | -1.04 | -- | -- | 0.0953 | 0.113 | 19.8 | 2048 | -- | -- |
| 52.08 | 0.337 | 10.5 | 0.189 | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
| 37.55 | 0.287 | 10.5 | -- | 0.496 | -- | -- | -- | 0.181 | 0.115 | -- | -- | -- | -- |
| 40.15 | 0.295 | 10.5 | -- | -- | -1.02 | -- | -- | 0.0877 | -- | 19.79 | 2311 | -- | -- |
| 53.03 | 0.34 | 10.5 | -- | -- | -- | -- | -- | 0.187 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.02 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 2 | 26.18 | humidity | 80 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 3 | 26.22 | temperature | 20 | 1440 | < th | dose dependent | rect. | 1 | 5 |
| 4 | 26.22 | temperature | 20 | 1440 | < th | dose dependent | rect. | 24 | 11 |
| 41 | 26.36 | temperature | 20 | 1440 | < th | dose dependent | sin | 7 | NA |
| 53 | 26.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 6 |
| 74 | 26.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 6 |
| 88 | 26.54 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 106 | 26.62 | temperature | 20 | 270 | < th | dose independent | rect. | 5 | 21 |
| 136 | 26.70 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 186 | 26.84 | temperature | 20 | 270 | > th | dose independent | rect. | 9 | 23 |
| 192 | 26.87 | humidity | 50 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 252 | 27.00 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 260 | 27.02 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 268 | 27.03 | temperature | 20 | 90 | < th | dose independent | rect. | 10 | 23 |
| 283 | 27.08 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 284 | 27.08 | temperature | 20 | 90 | < th | dose independent | rect. | 9 | 20 |
| 305 | 27.12 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 23 |
| 309 | 27.13 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 318 | 27.15 | temperature | 20 | 270 | < th | dose independent | rect. | 17 | 23 |
| 326 | 27.16 | temperature | 20 | 1440 | < th | dose dependent | no | NA | NA |
| 327 | 27.16 | humidity | 50 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 330 | 27.16 | temperature | 20 | 1440 | < th | dose dependent | rect. | 8 | 23 |
| 332 | 27.17 | humidity | 80 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 348 | 27.19 | temperature | 20 | 270 | < th | dose independent | rect. | 20 | 23 |
| 368 | 27.22 | temperature | 20 | 90 | > th | dose independent | rect. | 1 | 23 |
| 380 | 27.23 | wind | 3 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 389 | 27.24 | humidity | 90 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 390 | 27.24 | humidity | 90 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 399 | 27.26 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 408 | 27.27 | humidity | 90 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 411 | 27.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 9 |
| 419 | 27.28 | temperature | 20 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 421 | 27.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 22 |
| 434 | 27.30 | temperature | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 458 | 27.32 | temperature | 20 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 476 | 27.34 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 492 | 27.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 508 | 27.36 | humidity | 90 | 43200 | < th | dose dependent | rect. | 23 | 8 |
| 522 | 27.38 | temperature | 20 | 1440 | > th | dose independent | sin | 3 | NA |
| 537 | 27.39 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 5 |
| 546 | 27.39 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 551 | 27.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 21 |
| 558 | 27.41 | wind | 1 | 43200 | > th | dose independent | rect. | 6 | 7 |
| 561 | 27.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 563 | 27.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 17 | 19 |
| 599 | 27.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 9 |
| 607 | 27.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 658 | 27.46 | wind | 3 | 43200 | > th | dose independent | rect. | 15 | 17 |
| 660 | 27.46 | wind | 3 | 43200 | < th | dose independent | rect. | 14 | 18 |
| 661 | 27.46 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 680 | 27.47 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 14 |
| 698 | 27.48 | wind | 3 | 43200 | > th | dose independent | rect. | 17 | 15 |
| 712 | 27.48 | radiation | 10 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 745 | 27.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 20 |
| 749 | 27.49 | temperature | 20 | 30 | < th | dose independent | rect. | 1 | 23 |
| 760 | 27.49 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 763 | 27.49 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 765 | 27.50 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 13 |
| 797 | 27.51 | wind | 3 | 43200 | < th | dose independent | rect. | 17 | 15 |
| 800 | 27.51 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 17 |
| 834 | 27.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 842 | 27.52 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 20 |
| 861 | 27.53 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 862 | 27.53 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 882 | 27.53 | wind | 3 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 884 | 27.53 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 9 |
| 908 | 27.54 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 23 |
| 979 | 27.56 | humidity | 70 | 43200 | > th | dose dependent | sin | 12 | NA |