Os12g0595800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os12g0595800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.24 | 0.388 | 8.78 | 0.49 | 0.911 | 1.22 | 0.285 | -5.43 | 0.66 | 5.15 | 26.7 | 5803 | -- | -- |
| 80.62 | 0.418 | 8.66 | 1.41 | 0.929 | 0.867 | 0.526 | -- | 0.71 | 4.94 | 17.32 | 24913 | -- | -- |
| 68.13 | 0.384 | 8.78 | 0.417 | 0.905 | 1.27 | -- | -6.11 | 0.719 | 5.18 | 27.68 | 5769 | -- | -- |
| 75.57 | 0.405 | 8.64 | 1.68 | 0.94 | 1.01 | -- | -- | 0.81 | 5.54 | 16.68 | 4964 | -- | -- |
| 108.6 | 0.485 | 8.78 | 0.282 | -- | 1.47 | -- | -6.76 | 0.772 | -- | 27.82 | 5643 | -- | -- |
| 96.38 | 0.46 | 8.59 | 2.21 | 0.929 | -- | 0.3 | -- | 1.04 | 5.21 | -- | -- | -- | -- |
| 96.57 | 0.46 | 8.59 | 2.21 | 0.932 | -- | -- | -- | 1.03 | 5.3 | -- | -- | -- | -- |
| 115.68 | 0.501 | 8.67 | 1.77 | -- | 0.894 | -- | -- | 0.761 | -- | 20.29 | 7060 | -- | -- |
| 90.08 | 0.442 | 8.74 | -- | 0.973 | 1.83 | -- | -- | 0.257 | 5.8 | 11.5 | 46681 | -- | -- |
| 141.94 | 0.557 | 8.6 | 2.24 | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
| 225.4 | 0.702 | 8.64 | -- | 0.97 | -- | -- | -- | 0.789 | 5.21 | -- | -- | -- | -- |
| 132.82 | 0.537 | 8.79 | -- | -- | 1.91 | -- | -- | 0.236 | -- | 7.283 | 47520 | -- | -- |
| 274.65 | 0.774 | 8.66 | -- | -- | -- | -- | -- | 0.809 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.14 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 7 | 67.98 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 32 | 69.22 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 2 |
| 37 | 69.41 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 8 |
| 134 | 70.93 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 140 | 70.98 | wind | 3 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 241 | 71.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 249 | 71.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 2 |
| 254 | 71.94 | wind | 5 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 271 | 72.03 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 2 |
| 288 | 72.17 | wind | 5 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 306 | 72.27 | temperature | 30 | 4320 | < th | dose independent | sin | 12 | NA |
| 334 | 72.41 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 370 | 72.49 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 19 |
| 383 | 72.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 22 |
| 387 | 72.57 | temperature | 30 | 4320 | < th | dose independent | rect. | 15 | 14 |
| 397 | 72.58 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 431 | 72.66 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 6 |
| 432 | 72.66 | temperature | 30 | 4320 | < th | dose independent | rect. | 14 | 8 |
| 440 | 72.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 463 | 72.72 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 464 | 72.73 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 19 |
| 471 | 72.74 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 14 |
| 473 | 72.75 | temperature | 30 | 4320 | > th | dose independent | sin | 12 | NA |
| 481 | 72.76 | radiation | 1 | 14400 | < th | dose dependent | rect. | 3 | 2 |
| 486 | 72.77 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 22 |
| 519 | 72.83 | temperature | 30 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 561 | 72.86 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 17 |
| 566 | 72.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 576 | 72.88 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 17 |
| 609 | 72.93 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 7 |
| 616 | 72.94 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 12 |
| 617 | 72.94 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 622 | 72.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 642 | 72.97 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 683 | 73.00 | wind | 7 | 43200 | < th | dose independent | sin | 0 | NA |
| 693 | 73.00 | wind | 5 | 43200 | > th | dose dependent | sin | 20 | NA |
| 695 | 73.00 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 698 | 73.00 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 22 |
| 721 | 73.02 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 22 |
| 726 | 73.03 | wind | 7 | 43200 | > th | dose independent | sin | 0 | NA |
| 731 | 73.03 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 732 | 73.03 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 19 |
| 734 | 73.03 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 19 |
| 738 | 73.03 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 747 | 73.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 12 | 23 |
| 758 | 73.04 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 22 |
| 785 | 73.06 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 21 |
| 873 | 73.12 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 992 | 73.20 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 19 |