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Os12g0592900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.83 (0.0821) R2 : 0.405
β1 : -1.39 (0.301) R2dD : 0.0288 R2D : 0.0189
β2 : 1.5 (0.286) R2dC : 0.0763 R2C : -0.242
β3 : 4.32 (0.294) R2dE : 0.607 R2E : 0.269
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.867 (0.176) R2dN8 : 0.0407 R2N8 : -0.00572
σ : 1.54
deviance : 1087.03
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C
peak time of C : 13
E
wheather : humidity
threshold : 72.56
memory length : 726
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 15.9
open length of G : 4.11

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
1098.66 1.56 6.83 -1.38 1.51 4.15 0.953 0.751 -0.866 12.8 71.12 725 16 3.81
1098.89 1.54 6.82 -1.33 1.53 4.2 0.322 -- -0.867 12.7 71.55 724 15.9 3.85
1090.24 1.54 6.86 -1.52 1.42 4.16 -- 0.348 -0.898 12.9 72.33 726 15.9 4.1
1087.03 1.54 6.83 -1.39 1.5 4.32 -- -- -0.867 13 72.56 726 15.9 4.11
1148.86 1.58 6.81 -1.52 -- 3.4 -- 0.141 -0.743 -- 73.99 735 15.8 4.17
1579.42 1.86 6.81 -1.57 1.67 -- -0.241 -- -0.545 23.4 -- -- -- --
1579.67 1.86 6.81 -1.56 1.68 -- -- -- -0.544 23.4 -- -- -- --
1148.93 1.58 6.81 -1.51 -- 3.4 -- -- -0.742 -- 73.97 735 15.8 4.15
1138.05 1.57 6.83 -- 1.56 4.36 -- -- -0.797 13.1 72.39 726 16 4.07
1755.73 1.96 6.77 -1.52 -- -- -- -- -0.528 -- -- -- -- --
1643.8 1.9 6.77 -- 1.66 -- -- -- -0.37 23.3 -- -- -- --
1209.15 1.62 6.78 -- -- 3.38 -- -- -0.572 -- 73.75 735 15.8 4.17
1816.41 1.99 6.73 -- -- -- -- -- -0.359 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 1125.65 humidity 70 720 > th dose independent rect. 16 4
2 1133.61 humidity 70 720 > th dose independent rect. 16 12
3 1136.23 humidity 50 720 > th dose dependent rect. 16 4
7 1142.06 radiation 10 720 < th dose dependent rect. 16 10
9 1147.81 radiation 10 720 < th dose dependent rect. 16 2
20 1159.07 radiation 10 720 < th dose dependent rect. 15 12
34 1167.70 radiation 1 720 > th dose independent rect. 11 19
35 1169.72 radiation 1 720 < th dose independent rect. 11 16
47 1173.80 radiation 10 720 < th dose independent rect. 16 1
51 1176.17 radiation 1 720 < th dose dependent rect. 8 11
56 1178.38 radiation 1 720 < th dose independent rect. 11 8
57 1178.41 radiation 1 720 < th dose independent rect. 8 11
71 1181.31 humidity 70 720 > th dose independent sin 14 NA
83 1186.39 radiation 1 1440 < th dose independent rect. 11 19
85 1188.38 humidity 70 720 > th dose independent rect. 16 17
89 1189.64 radiation 1 720 < th dose dependent rect. 11 16
108 1192.95 humidity 70 720 < th dose independent sin 14 NA
118 1194.68 temperature 30 720 < th dose independent rect. 16 4
128 1196.88 wind 7 43200 > th dose independent rect. 12 2
131 1197.90 radiation 1 1440 < th dose dependent sin 22 NA
140 1198.46 radiation 1 1440 < th dose dependent rect. 9 15
158 1199.40 wind 7 43200 > th dose dependent rect. 11 7
162 1199.56 radiation 1 1440 < th dose dependent rect. 11 13
182 1200.14 wind 9 43200 < th dose independent rect. 11 10
192 1200.70 temperature 30 720 < th dose independent rect. 16 12
194 1200.80 humidity 50 720 > th dose dependent rect. 16 10
201 1201.21 wind 9 43200 > th dose independent rect. 11 10
210 1201.96 humidity 50 720 > th dose dependent rect. 14 14
245 1204.04 humidity 70 720 < th dose independent rect. 13 19
247 1204.21 wind 7 43200 < th dose independent rect. 12 2
254 1205.35 humidity 70 720 < th dose independent rect. 13 7
272 1205.93 radiation 1 720 > th dose independent rect. 11 8
282 1205.96 wind 9 43200 > th dose independent rect. 14 7
307 1206.94 wind 7 43200 > th dose dependent rect. 11 11
316 1207.56 humidity 50 720 > th dose dependent sin 17 NA
332 1208.64 wind 9 43200 > th dose dependent rect. 14 7
337 1209.30 humidity 50 1440 > th dose dependent rect. 11 11
369 1211.92 wind 9 43200 < th dose independent rect. 13 5
371 1211.98 wind 7 43200 > th dose dependent rect. 12 2
409 1213.92 humidity 90 1440 < th dose dependent rect. 11 11
444 1215.97 wind 9 43200 < th dose independent rect. 14 7
455 1216.63 humidity 80 1440 < th dose independent rect. 7 13
464 1217.04 temperature 25 1440 > th dose dependent rect. 13 22
478 1217.18 humidity 80 1440 < th dose independent rect. 7 8
496 1217.76 wind 9 43200 < th dose independent rect. 11 14
499 1217.96 temperature 25 1440 > th dose dependent rect. 13 1
506 1218.29 temperature 25 1440 > th dose dependent rect. 18 22
510 1218.66 radiation 1 720 < th dose independent sin 21 NA
514 1218.88 wind 9 43200 > th dose independent rect. 11 14
516 1218.96 temperature 25 1440 > th dose dependent rect. 7 18
559 1219.31 humidity 50 1440 > th dose dependent sin 20 NA
573 1219.36 temperature 25 1440 > th dose dependent rect. 9 23
574 1219.37 temperature 25 1440 > th dose dependent no NA NA
597 1219.61 temperature 25 1440 > th dose dependent rect. 21 23
631 1220.16 temperature 25 1440 > th dose dependent sin 21 NA
675 1220.70 humidity 90 1440 < th dose dependent sin 20 NA
682 1220.88 humidity 80 1440 < th dose dependent rect. 12 22
693 1221.05 humidity 80 1440 > th dose independent rect. 7 13
760 1222.18 temperature 25 1440 > th dose dependent rect. 13 11
801 1222.50 humidity 50 720 > th dose dependent rect. 11 17
882 1223.65 humidity 80 1440 < th dose dependent rect. 16 23
906 1224.03 radiation 1 1440 < th dose dependent rect. 5 16
921 1224.26 radiation 1 1440 < th dose dependent rect. 5 19
926 1224.30 humidity 90 720 < th dose dependent rect. 15 8
935 1224.42 humidity 50 720 > th dose dependent rect. 8 18
991 1225.02 humidity 70 1440 > th dose independent rect. 18 21