Os12g0588900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0588900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 86.09 | 0.436 | 9.8 | 0.919 | 1.32 | -1.1 | 0.533 | 1.4 | 0.152 | 20.5 | 22.74 | 1293 | -- | -- |
| 87.39 | 0.435 | 9.86 | 0.523 | 1.32 | -0.958 | 0.62 | -- | 0.0327 | 20.5 | 22.73 | 1292 | -- | -- |
| 86.99 | 0.434 | 9.8 | 0.927 | 1.32 | -1.11 | -- | 1.48 | 0.159 | 20.5 | 22.71 | 1292 | -- | -- |
| 88.37 | 0.438 | 9.85 | 0.484 | 1.32 | -0.97 | -- | -- | 0.0351 | 20.5 | 22.41 | 1304 | -- | -- |
| 180.76 | 0.626 | 9.76 | 0.946 | -- | -1.08 | -- | 1.46 | 0.154 | -- | 23 | 1401 | -- | -- |
| 120.38 | 0.514 | 9.9 | 0.177 | 1.3 | -- | 0.534 | -- | -0.167 | 20.1 | -- | -- | -- | -- |
| 121.23 | 0.516 | 9.9 | 0.162 | 1.3 | -- | -- | -- | -0.166 | 20 | -- | -- | -- | -- |
| 181.43 | 0.627 | 9.82 | 0.483 | -- | -0.934 | -- | -- | 0.0269 | -- | 22.41 | 1407 | -- | -- |
| 94.28 | 0.452 | 9.87 | -- | 1.32 | -0.864 | -- | -- | -0.0377 | 20.4 | 22.48 | 1293 | -- | -- |
| 213.83 | 0.683 | 9.86 | 0.15 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 121.93 | 0.517 | 9.9 | -- | 1.3 | -- | -- | -- | -0.185 | 20.1 | -- | -- | -- | -- |
| 187.15 | 0.637 | 9.83 | -- | -- | -0.812 | -- | -- | -0.0517 | -- | 22.64 | 1412 | -- | -- |
| 214.42 | 0.683 | 9.87 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.96 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 5 | 78.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 7 | 79.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 20 | 81.82 | temperature | 10 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 23 | 82.54 | temperature | 10 | 270 | > th | dose dependent | rect. | 13 | 19 |
| 24 | 82.61 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 30 | 82.99 | temperature | 10 | 90 | > th | dose dependent | rect. | 15 | 18 |
| 37 | 83.20 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 71 | 83.93 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 4 |
| 96 | 84.39 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 6 |
| 117 | 84.53 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 128 | 84.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 172 | 84.98 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 175 | 85.00 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 16 |
| 327 | 86.03 | temperature | 25 | 1440 | > th | dose dependent | sin | 17 | NA |
| 404 | 86.51 | temperature | 20 | 720 | > th | dose dependent | sin | 11 | NA |
| 494 | 86.97 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 545 | 87.22 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 554 | 87.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 16 | 18 |
| 617 | 87.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 649 | 87.61 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 16 |
| 685 | 87.81 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 744 | 87.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 1 | 18 |
| 806 | 88.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 12 |
| 926 | 88.30 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 932 | 88.30 | temperature | 25 | 1440 | > th | dose dependent | rect. | 5 | 23 |