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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0587300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.64 (0.0338) R2 : 0.601
β1 : 1.03 (0.129) R2dD : 0.0647 R2D : 0.0753
β2 : 1.24 (0.0977) R2dC : 0.195 R2C : 0.331
β3 : 1.74 (0.179) R2dE : 0.129 R2E : 0.336
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.355 (0.076) R2dN8 : 0.0292 R2N8 : 0.0308
σ : 0.623
deviance : 179.16
__
_____
C
peak time of C : 15.2
E
wheather : temperature
threshold : 15.84
memory length : 230
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
176.57 0.624 4.6 1.33 1.23 1.84 -0.796 1.95 0.434 15.2 11.72 231 -- --
178.71 0.623 4.64 1.03 1.24 1.75 -0.377 -- 0.355 15.2 15.79 228 -- --
178.2 0.622 4.61 1.22 1.25 1.8 -- 1.17 0.418 15.2 14.4 231 -- --
179.16 0.623 4.64 1.03 1.24 1.74 -- -- 0.355 15.2 15.84 230 -- --
234.13 0.713 4.67 0.807 -- 2.55 -- 0.341 0.191 -- 19.16 146 -- --
214.55 0.687 4.59 1.42 1.76 -- -0.0598 -- 0.616 15.6 -- -- -- --
214.56 0.686 4.59 1.42 1.76 -- -- -- 0.615 15.6 -- -- -- --
233.94 0.712 4.68 0.799 -- 2.59 -- -- 0.159 -- 19.33 141 -- --
203.99 0.665 4.67 -- 1.09 2.34 -- -- 0.198 15.1 14.08 230 -- --
387.06 0.919 4.58 1.35 -- -- -- -- 0.569 -- -- -- -- --
267.67 0.765 4.62 -- 1.73 -- -- -- 0.457 15.6 -- -- -- --
248.97 0.735 4.7 -- -- 2.95 -- -- 0.0413 -- 17.74 146 -- --
434.82 0.973 4.62 -- -- -- -- -- 0.419 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 169.79 temperature 15 270 > th dose dependent rect. 20 22
16 173.20 temperature 15 90 > th dose dependent rect. 23 20
26 174.35 temperature 30 270 < th dose dependent rect. 1 22
33 174.95 temperature 10 270 > th dose dependent rect. 5 23
61 176.53 temperature 30 270 < th dose dependent rect. 16 21
80 177.05 temperature 10 270 > th dose dependent no NA NA
154 178.76 temperature 30 270 < th dose dependent no NA NA
186 179.31 temperature 25 1440 < th dose dependent rect. 6 6
207 179.51 temperature 25 270 < th dose dependent sin 23 NA
209 179.55 temperature 10 270 > th dose dependent rect. 7 11
221 179.66 temperature 15 270 > th dose dependent rect. 10 23
225 179.74 temperature 20 270 > th dose dependent rect. 13 23
283 180.50 temperature 30 270 < th dose dependent rect. 7 23
300 180.73 temperature 25 1440 < th dose dependent rect. 7 2
337 181.11 temperature 30 90 < th dose dependent rect. 9 23
375 181.52 temperature 30 10 < th dose dependent rect. 7 17
404 181.80 temperature 15 270 > th dose dependent sin 23 NA
477 182.38 temperature 25 1440 < th dose dependent sin 2 NA
484 182.43 temperature 30 90 < th dose dependent rect. 9 14
543 182.87 temperature 25 1440 < th dose dependent rect. 5 17
586 183.11 temperature 30 30 < th dose dependent rect. 11 23
598 183.20 temperature 25 270 > th dose independent rect. 22 20
651 183.45 temperature 30 1440 < th dose dependent rect. 21 15
694 183.61 temperature 15 1440 > th dose dependent rect. 5 5
759 183.82 temperature 10 1440 > th dose dependent rect. 21 15
763 183.83 temperature 25 1440 < th dose independent rect. 7 20
776 183.85 temperature 10 1440 > th dose dependent rect. 7 1
848 183.99 temperature 25 1440 > th dose independent rect. 7 18
952 184.15 temperature 25 1440 < th dose independent rect. 7 5
957 184.16 temperature 15 90 > th dose dependent sin 21 NA
965 184.17 temperature 25 1440 < th dose dependent no NA NA