Os12g0586000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Disease resistance protein ADR1 (Activated disease resistance protein 1).
FiT-DB / Search/ Help/ Sample detail
|
Os12g0586000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Disease resistance protein ADR1 (Activated disease resistance protein 1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.82 | 0.325 | 13.7 | 0.597 | 0.37 | -0.523 | -0.389 | 1.08 | 0.376 | 22.8 | 23.1 | 193 | -- | -- |
| 48.39 | 0.324 | 13.7 | 0.73 | 0.416 | -0.838 | -0.241 | -- | 0.405 | 22.8 | 21.19 | 62 | -- | -- |
| 48.35 | 0.324 | 13.7 | 0.607 | 0.358 | -0.517 | -- | 1.06 | 0.373 | 22.7 | 23 | 255 | -- | -- |
| 48.58 | 0.325 | 13.7 | 0.72 | 0.397 | -0.888 | -- | -- | 0.414 | 22.8 | 21.4 | 101 | -- | -- |
| 54.83 | 0.345 | 13.7 | 0.497 | -- | -0.459 | -- | 1.34 | 0.324 | -- | 25.7 | 656 | -- | -- |
| 54.9 | 0.347 | 13.7 | 0.872 | 0.341 | -- | -0.227 | -- | 0.491 | 22.1 | -- | -- | -- | -- |
| 55.1 | 0.348 | 13.7 | 0.881 | 0.342 | -- | -- | -- | 0.491 | 22.1 | -- | -- | -- | -- |
| 56.2 | 0.349 | 13.7 | 0.708 | -- | -0.869 | -- | -- | 0.409 | -- | 21.25 | 398 | -- | -- |
| 61.03 | 0.364 | 13.7 | -- | 0.43 | -1.31 | -- | -- | 0.381 | 22.7 | 20.78 | 235 | -- | -- |
| 62.2 | 0.369 | 13.7 | 0.886 | -- | -- | -- | -- | 0.492 | -- | -- | -- | -- | -- |
| 75.56 | 0.407 | 13.7 | -- | 0.347 | -- | -- | -- | 0.393 | 22.3 | -- | -- | -- | -- |
| 58.83 | 0.357 | 13.7 | -- | -- | -0.859 | -- | -- | 0.25 | -- | 17.62 | 47520 | -- | -- |
| 82.89 | 0.425 | 13.7 | -- | -- | -- | -- | -- | 0.393 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.00 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 6 |
| 2 | 46.05 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 8 |
| 3 | 46.06 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 10 |
| 4 | 46.09 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 6 |
| 9 | 46.16 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 18 | 46.24 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 32 | 46.40 | humidity | 90 | 14400 | > th | dose dependent | sin | 3 | NA |
| 100 | 46.83 | humidity | 90 | 14400 | > th | dose independent | sin | 5 | NA |
| 102 | 46.83 | humidity | 90 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 130 | 46.93 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 21 |
| 154 | 46.97 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 174 | 46.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 8 | 23 |
| 175 | 46.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 202 | 47.05 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 23 |
| 276 | 47.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 8 |
| 399 | 47.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 416 | 47.57 | wind | 9 | 720 | > th | dose independent | rect. | 18 | 16 |
| 447 | 47.61 | radiation | 10 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 473 | 47.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 2 | 23 |
| 474 | 47.64 | humidity | 90 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 482 | 47.65 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 490 | 47.67 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 516 | 47.70 | humidity | 90 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 518 | 47.71 | humidity | 90 | 14400 | < th | dose independent | sin | 5 | NA |
| 556 | 47.77 | humidity | 90 | 14400 | > th | dose independent | rect. | 5 | 23 |
| 600 | 47.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 614 | 47.87 | temperature | 20 | 10 | > th | dose independent | rect. | 7 | 22 |
| 673 | 47.96 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 674 | 47.96 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 18 |
| 682 | 47.97 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 19 |
| 728 | 48.04 | wind | 9 | 720 | > th | dose dependent | rect. | 18 | 16 |
| 844 | 48.19 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 876 | 48.23 | wind | 9 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 889 | 48.25 | wind | 9 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 892 | 48.25 | radiation | 30 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 902 | 48.25 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 912 | 48.27 | humidity | 90 | 14400 | < th | dose independent | rect. | 23 | 22 |
| 950 | 48.30 | temperature | 25 | 90 | < th | dose dependent | rect. | 4 | 23 |
| 951 | 48.31 | wind | 1 | 4320 | > th | dose independent | rect. | 6 | 3 |
| 952 | 48.31 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 4 |
| 967 | 48.32 | radiation | 30 | 4320 | < th | dose independent | rect. | 16 | 15 |
| 972 | 48.32 | humidity | 90 | 14400 | < th | dose independent | rect. | 5 | 23 |
| 985 | 48.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 23 |
| 992 | 48.34 | humidity | 90 | 14400 | < th | dose independent | no | NA | NA |