Os12g0583300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os12g0583300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1020.04 | 1.5 | 11.2 | -6.28 | 1.89 | -3.24 | 1.82 | -4.58 | 0.184 | 4.54 | 0.3634 | 7236 | 14.8 | 3.68 |
| 1017.29 | 1.49 | 11.2 | -6.02 | 1.46 | -4.25 | 2.93 | -- | 0.297 | 4.36 | 0.434 | 7256 | 14.7 | 3.65 |
| 997.12 | 1.47 | 11.3 | -6.23 | 1.47 | -3.79 | -- | -4.07 | 0.0921 | 3.65 | 0.3821 | 7290 | 15 | 3.46 |
| 1030.7 | 1.5 | 11.3 | -6.11 | 1.46 | -4.02 | -- | -- | 0.179 | 3.69 | 0.3989 | 7281 | 15 | 3.5 |
| 1061.72 | 1.52 | 11.2 | -5.99 | -- | -4.75 | -- | -3.89 | 0.311 | -- | 0.5 | 7313 | 14.7 | 3.76 |
| 1280.37 | 1.68 | 11.3 | -5.63 | 2.42 | -- | 3.03 | -- | -0.117 | 4.84 | -- | -- | -- | -- |
| 1303.2 | 1.69 | 11.4 | -5.64 | 2.43 | -- | -- | -- | -0.132 | 4.65 | -- | -- | -- | -- |
| 1088.25 | 1.54 | 11.2 | -6.01 | -- | -5.18 | -- | -- | 0.301 | -- | 0.4196 | 7310 | 14.7 | 3.66 |
| 1982.64 | 2.07 | 11.3 | -- | 1.08 | -3.26 | -- | -- | 0.532 | 3.45 | 0.7601 | 7287 | 15.2 | 3.53 |
| 1618.17 | 1.88 | 11.4 | -5.55 | -- | -- | -- | -- | -0.0688 | -- | -- | -- | -- | -- |
| 2143.04 | 2.17 | 11.2 | -- | 2.33 | -- | -- | -- | 0.496 | 4.72 | -- | -- | -- | -- |
| 2023.95 | 2.1 | 11.2 | -- | -- | -3.83 | -- | -- | 0.533 | -- | 0.5001 | 7320 | 14.5 | 3.9 |
| 2431.27 | 2.3 | 11.2 | -- | -- | -- | -- | -- | 0.547 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 886.82 | radiation | 30 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 2 | 887.64 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 54 | 892.11 | radiation | 30 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 57 | 892.91 | radiation | 40 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 60 | 893.16 | radiation | 40 | 43200 | > th | dose independent | sin | 8 | NA |
| 61 | 893.27 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 137 | 895.64 | radiation | 10 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 141 | 895.96 | radiation | 20 | 43200 | > th | dose dependent | rect. | 9 | 4 |
| 203 | 897.83 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 23 |
| 221 | 898.08 | temperature | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 262 | 898.57 | radiation | 40 | 43200 | > th | dose independent | no | NA | NA |
| 414 | 899.40 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 422 | 899.65 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 493 | 900.54 | temperature | 30 | 43200 | < th | dose independent | rect. | 19 | 14 |
| 519 | 901.02 | radiation | 20 | 43200 | > th | dose dependent | sin | 7 | NA |
| 561 | 901.83 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 717 | 903.51 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 12 |
| 718 | 903.52 | radiation | 30 | 43200 | < th | dose independent | rect. | 4 | 9 |
| 722 | 903.53 | radiation | 30 | 43200 | < th | dose independent | rect. | 17 | 20 |
| 812 | 904.37 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 11 |
| 941 | 904.85 | radiation | 20 | 43200 | > th | dose dependent | no | NA | NA |