FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os12g0582000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cytochrome P450 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.85 (0.0365) R2 : 0.533
β1 : -2.58 (0.134) R2dD : 0.395 R2D : 0.386
β2 : 1.1 (0.0918) R2dC : 0.147 R2C : 0.136
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0203 (0.0779) R2dN8 : 9.34e-05 R2N8 : 0.00223
σ : 0.686
deviance : 214.82
__
_____
C
peak time of C : 3.51
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
186.66 0.642 5.84 -2.67 0.864 0.737 -2.07 -1.26 0.0295 6.51 9.947 31 -- --
193.76 0.648 5.84 -2.67 0.837 0.721 -2.24 -- 0.0379 5.66 9.937 31 -- --
196.91 0.654 5.84 -2.68 0.863 0.735 -- -0.984 0.0314 6.54 9.85 31 -- --
202.64 0.663 5.83 -2.64 0.83 0.682 -- -- 0.044 6.28 9.891 31 -- --
201 0.66 5.87 -2.58 -- 1.02 -- -0.893 0.0161 -- 8.45 416 -- --
202.23 0.667 5.85 -2.61 1.11 -- -2.04 -- 0.00844 3.62 -- -- -- --
214.82 0.686 5.85 -2.58 1.1 -- -- -- 0.0203 3.51 -- -- -- --
205.45 0.668 5.85 -2.64 -- 1.13 -- -- 0.0823 -- 9.821 403 -- --
370.19 0.896 5.76 -- 0.724 0.767 -- -- 0.345 6.25 13.74 50 -- --
282.54 0.785 5.85 -2.53 -- -- -- -- 0.0495 -- -- -- -- --
390.04 0.924 5.78 -- 1.05 -- -- -- 0.307 3.53 -- -- -- --
362.7 0.887 5.8 -- -- 1.27 -- -- 0.416 -- 11.73 392 -- --
451.67 0.992 5.78 -- -- -- -- -- 0.33 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 180.87 radiation 20 4320 > th dose independent rect. 11 1
2 180.96 temperature 30 720 < th dose dependent rect. 17 7
3 180.97 wind 9 14400 > th dose dependent rect. 18 20
4 181.01 temperature 30 720 < th dose dependent rect. 19 5
5 181.09 temperature 15 720 > th dose dependent rect. 17 6
6 181.37 temperature 25 720 > th dose dependent rect. 22 1
11 181.59 temperature 25 720 < th dose independent rect. 21 3
12 181.61 temperature 25 4320 < th dose independent rect. 24 2
13 181.84 temperature 30 270 < th dose dependent rect. 17 15
16 182.02 temperature 20 270 > th dose independent rect. 22 7
17 182.03 temperature 20 270 > th dose independent rect. 15 14
21 182.06 temperature 25 10 < th dose dependent rect. 17 17
33 182.29 temperature 20 10 > th dose independent rect. 15 16
45 182.46 wind 3 43200 < th dose independent rect. 19 8
48 182.49 temperature 10 720 > th dose dependent rect. 17 8
61 182.72 wind 5 43200 < th dose dependent rect. 24 2
63 182.74 temperature 25 4320 > th dose independent rect. 22 5
65 182.77 wind 3 43200 < th dose independent rect. 2 1
70 182.83 wind 3 43200 > th dose independent rect. 2 1
73 182.85 wind 3 43200 < th dose independent rect. 18 10
78 182.92 wind 3 43200 > th dose independent rect. 19 8
81 182.96 temperature 25 720 > th dose independent rect. 22 1
86 183.01 wind 9 43200 > th dose dependent rect. 10 4
88 183.05 wind 3 43200 < th dose independent rect. 23 4
90 183.08 wind 3 43200 > th dose independent rect. 18 10
94 183.16 wind 3 43200 < th dose independent rect. 16 12
109 183.25 wind 7 14400 > th dose dependent rect. 10 1
125 183.41 wind 3 43200 < th dose dependent rect. 19 9
126 183.41 temperature 15 270 > th dose dependent rect. 21 9
128 183.42 wind 7 14400 > th dose independent rect. 9 2
132 183.43 wind 3 43200 > th dose independent rect. 16 13
148 183.52 wind 3 43200 < th dose independent sin 13 NA
150 183.53 temperature 25 4320 > th dose independent rect. 24 1
156 183.54 wind 1 43200 < th dose dependent rect. 8 4
161 183.57 wind 9 43200 > th dose dependent rect. 9 7
168 183.61 temperature 25 720 > th dose independent rect. 21 3
175 183.65 temperature 20 270 > th dose independent rect. 1 2
177 183.65 humidity 80 43200 < th dose dependent rect. 4 1
179 183.66 wind 3 43200 > th dose independent rect. 23 4
183 183.67 temperature 25 270 < th dose dependent sin 13 NA
189 183.70 wind 9 14400 < th dose independent rect. 18 20
198 183.73 wind 3 43200 > th dose independent sin 13 NA
221 183.82 temperature 20 10 > th dose independent rect. 17 14
224 183.84 wind 7 14400 < th dose independent rect. 9 2
248 183.91 wind 9 14400 > th dose independent rect. 18 20
264 183.96 wind 3 43200 < th dose independent rect. 13 18
278 184.01 temperature 25 720 < th dose independent rect. 23 1
307 184.11 humidity 50 43200 > th dose independent rect. 5 1
328 184.18 wind 3 43200 > th dose independent rect. 13 18
330 184.19 wind 7 14400 < th dose independent rect. 7 4
340 184.22 wind 9 43200 > th dose independent rect. 6 8
346 184.23 wind 3 43200 < th dose independent rect. 9 20
357 184.25 wind 3 43200 < th dose dependent rect. 19 20
367 184.27 wind 3 43200 < th dose independent rect. 13 21
370 184.27 wind 3 43200 < th dose dependent rect. 8 21
371 184.27 wind 3 43200 < th dose dependent rect. 8 23
379 184.29 wind 3 43200 < th dose dependent rect. 19 22
390 184.33 wind 3 43200 < th dose dependent sin 12 NA
419 184.40 temperature 25 720 < th dose independent rect. 17 7
422 184.40 temperature 20 270 < th dose independent rect. 16 15
435 184.42 wind 3 43200 > th dose independent rect. 13 21
436 184.42 temperature 25 10 < th dose dependent sin 11 NA
456 184.47 temperature 20 270 < th dose independent rect. 19 12
459 184.47 wind 3 43200 < th dose dependent rect. 6 23
460 184.48 temperature 20 270 > th dose independent sin 12 NA
484 184.52 wind 3 43200 < th dose dependent rect. 13 21
486 184.53 temperature 20 10 > th dose independent rect. 22 9
496 184.54 wind 3 43200 < th dose dependent rect. 11 23
506 184.55 wind 3 43200 < th dose dependent rect. 13 23
519 184.57 wind 3 43200 < th dose dependent rect. 3 23
533 184.60 wind 3 43200 < th dose dependent no NA NA
540 184.61 wind 3 43200 > th dose independent rect. 9 22
542 184.61 wind 3 43200 < th dose dependent rect. 16 18
546 184.62 wind 3 43200 > th dose independent rect. 9 20
555 184.63 wind 9 43200 > th dose independent rect. 1 13
567 184.65 wind 3 43200 < th dose independent rect. 22 22
575 184.66 wind 3 43200 < th dose independent rect. 19 23
597 184.69 temperature 20 270 < th dose independent sin 12 NA
630 184.73 wind 9 43200 > th dose dependent sin 22 NA
634 184.74 wind 3 43200 < th dose independent no NA NA
668 184.78 wind 3 43200 < th dose independent rect. 16 23
692 184.80 temperature 15 270 > th dose dependent rect. 15 14
699 184.82 wind 1 43200 < th dose dependent rect. 11 1
701 184.82 temperature 15 90 > th dose dependent rect. 17 13
705 184.83 temperature 20 10 < th dose independent rect. 17 14
708 184.83 wind 3 43200 > th dose independent rect. 6 22
728 184.86 wind 3 43200 < th dose independent rect. 1 23
734 184.87 wind 3 43200 > th dose independent rect. 22 22
777 184.93 humidity 80 43200 > th dose independent rect. 20 10
792 184.94 radiation 20 720 < th dose dependent rect. 9 3
809 184.97 humidity 80 43200 < th dose independent rect. 24 1
837 185.00 wind 3 43200 > th dose independent rect. 19 23
847 185.01 temperature 25 10 < th dose dependent rect. 17 11
850 185.02 wind 3 43200 > th dose independent no NA NA
853 185.02 wind 3 43200 < th dose dependent rect. 6 9
859 185.03 temperature 15 270 > th dose dependent sin 12 NA
891 185.07 wind 9 43200 > th dose dependent rect. 2 14
892 185.07 wind 3 43200 < th dose dependent rect. 14 17
896 185.08 temperature 25 720 > th dose independent rect. 17 9
917 185.09 wind 3 43200 > th dose independent rect. 16 23
948 185.13 wind 3 43200 > th dose independent rect. 1 23
952 185.14 radiation 20 720 < th dose dependent rect. 9 1