Os12g0581700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os12g0581700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 59.58 | 0.363 | 12.7 | -0.292 | 1.52 | 1.15 | -0.711 | 0.00954 | 0.171 | 16.9 | 24.88 | 870 | -- | -- |
| 59.58 | 0.359 | 12.7 | -0.294 | 1.52 | 1.15 | -0.711 | -- | 0.17 | 16.9 | 24.87 | 868 | -- | -- |
| 60.78 | 0.363 | 12.7 | -0.299 | 1.54 | 1.12 | -- | -0.0446 | 0.176 | 17 | 24.9 | 902 | -- | -- |
| 60.71 | 0.363 | 12.7 | -0.295 | 1.58 | 1.11 | -- | -- | 0.17 | 17 | 24.94 | 925 | -- | -- |
| 113.61 | 0.496 | 12.8 | -0.408 | -- | 1.98 | -- | 0.306 | 0.103 | -- | 24.34 | 383 | -- | -- |
| 90.35 | 0.446 | 12.7 | -0.0191 | 1.71 | -- | -0.342 | -- | 0.268 | 17.7 | -- | -- | -- | -- |
| 90.62 | 0.446 | 12.7 | -0.0178 | 1.71 | -- | -- | -- | 0.267 | 17.7 | -- | -- | -- | -- |
| 110.55 | 0.49 | 12.7 | -0.442 | -- | 2.12 | -- | -- | 0.0043 | -- | 24.11 | 389 | -- | -- |
| 62.48 | 0.368 | 12.7 | -- | 1.6 | 0.968 | -- | -- | 0.309 | 17.2 | 27.5 | 923 | -- | -- |
| 241.51 | 0.726 | 12.7 | -0.0719 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 90.63 | 0.445 | 12.7 | -- | 1.71 | -- | -- | -- | 0.269 | 17.7 | -- | -- | -- | -- |
| 115.45 | 0.5 | 12.7 | -- | -- | 2.06 | -- | -- | 0.0686 | -- | 24.25 | 388 | -- | -- |
| 241.65 | 0.726 | 12.7 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.82 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 18 |
| 2 | 59.13 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 19 |
| 4 | 59.14 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 37 | 60.00 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 20 |
| 46 | 60.11 | temperature | 30 | 720 | < th | dose independent | rect. | 10 | 13 |
| 47 | 60.12 | radiation | 1 | 720 | > th | dose dependent | rect. | 17 | 13 |
| 52 | 60.25 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 68 | 60.36 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 11 |
| 98 | 60.56 | temperature | 25 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 118 | 60.61 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |
| 127 | 60.61 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 23 |
| 143 | 60.68 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 193 | 60.84 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 3 |
| 217 | 60.95 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 18 |
| 281 | 61.26 | temperature | 30 | 720 | < th | dose independent | sin | 18 | NA |
| 341 | 61.53 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 357 | 61.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 364 | 61.60 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 22 |
| 370 | 61.61 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 378 | 61.63 | wind | 5 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 394 | 61.68 | temperature | 20 | 4320 | > th | dose dependent | rect. | 17 | 6 |
| 425 | 61.74 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 14 |
| 435 | 61.76 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 440 | 61.77 | wind | 5 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 450 | 61.80 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 452 | 61.80 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 461 | 61.81 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 466 | 61.82 | wind | 5 | 43200 | < th | dose independent | rect. | 2 | 15 |
| 467 | 61.82 | temperature | 20 | 4320 | > th | dose dependent | sin | 13 | NA |
| 533 | 61.95 | temperature | 30 | 720 | < th | dose independent | sin | 11 | NA |
| 539 | 61.96 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 618 | 62.10 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 22 |
| 620 | 62.10 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 627 | 62.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 648 | 62.14 | temperature | 30 | 720 | > th | dose independent | rect. | 15 | 20 |
| 677 | 62.18 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 740 | 62.27 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 5 |
| 756 | 62.29 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 828 | 62.37 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 830 | 62.38 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 22 |
| 866 | 62.42 | temperature | 25 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 869 | 62.42 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 2 |
| 889 | 62.45 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 905 | 62.48 | temperature | 25 | 4320 | < th | dose independent | rect. | 15 | 18 |
| 907 | 62.48 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 20 |
| 960 | 62.53 | temperature | 30 | 720 | > th | dose independent | sin | 18 | NA |
| 979 | 62.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 17 |